Variant report

Variant	rs802340
Chromosome Location	chr7:120187785-120187786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:120183666..120186055-chr7:120187488..120190847,3	K562	blood:
2	chr7:120182960..120185753-chr7:120186479..120188988,2	K562	blood:
3	chr7:120180481..120182755-chr7:120186215..120188744,2	K562	blood:

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10085878	0.86[JPT][hapmap]
rs10230753	0.87[JPT][hapmap]
rs10233829	0.92[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10245507	0.92[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10258480	0.87[JPT][hapmap]
rs10274789	0.85[ASN][1000 genomes]
rs10275068	0.83[ASN][1000 genomes]
rs10276390	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10278347	0.90[JPT][hapmap]
rs10279267	0.89[ASN][1000 genomes]
rs10279812	0.92[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1029978	0.85[ASN][1000 genomes]
rs10488298	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs10488299	0.92[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10953918	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs11761401	0.85[ASN][1000 genomes]
rs11980474	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs12530902	0.85[JPT][hapmap]
rs12531042	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12531146	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs12531730	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs12536754	0.83[ASN][1000 genomes]
rs12537274	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs12706290	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12706291	0.90[JPT][hapmap]
rs12706292	0.81[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs13224331	0.87[JPT][hapmap]
rs13241174	0.91[JPT][hapmap]
rs1358369	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1405835	0.91[JPT][hapmap]
rs1405836	0.87[JPT][hapmap]
rs1527653	0.87[JPT][hapmap]
rs1569089	0.90[JPT][hapmap]
rs17132703	0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1881023	0.91[JPT][hapmap]
rs1881024	0.85[JPT][hapmap]
rs1918465	0.87[JPT][hapmap]
rs1997229	0.86[JPT][hapmap]
rs2041679	0.82[ASN][1000 genomes]
rs2041680	0.82[ASN][1000 genomes]
rs2402539	0.85[JPT][hapmap]
rs3814461	0.91[JPT][hapmap]
rs4464900	0.87[JPT][hapmap]
rs4610678	0.91[JPT][hapmap]
rs4727910	0.87[JPT][hapmap]
rs4730965	0.90[JPT][hapmap]
rs4730966	0.91[JPT][hapmap]
rs58738977	0.82[ASN][1000 genomes]
rs59732893	0.82[ASN][1000 genomes]
rs62473168	0.82[ASN][1000 genomes]
rs6466748	0.83[ASN][1000 genomes]
rs6466752	0.91[JPT][hapmap]
rs6948806	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6950967	0.91[JPT][hapmap]
rs6951226	0.87[JPT][hapmap]
rs6966670	0.92[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs6978175	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs702414	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs702415	0.88[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs702416	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs723908	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7785421	0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7785571	0.80[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs7788666	0.82[ASN][1000 genomes]
rs7790906	0.91[JPT][hapmap]
rs7791822	0.91[JPT][hapmap]
rs7791851	0.90[JPT][hapmap]
rs7798075	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7808260	0.87[JPT][hapmap]
rs7809573	0.82[ASN][1000 genomes]
rs802332	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs802333	0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs802334	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs802335	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs802336	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs802337	0.92[ASN][1000 genomes]
rs802338	0.82[ASN][1000 genomes]
rs802339	0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs802344	0.85[ASN][1000 genomes]
rs802345	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs802346	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs802347	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs802348	0.97[ASN][1000 genomes]
rs802349	0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs802350	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs802351	0.97[ASN][1000 genomes]
rs802352	0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs802353	0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs802354	0.85[ASN][1000 genomes]
rs802355	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs802356	0.92[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs802357	0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs802358	0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs802359	0.92[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs802360	0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs802362	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs802363	0.93[ASN][1000 genomes]
rs802364	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs802365	0.84[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs802366	0.87[ASN][1000 genomes]
rs802367	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs802368	0.91[ASN][1000 genomes]
rs802369	0.93[ASN][1000 genomes]
rs802370	0.82[ASN][1000 genomes]
rs802371	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs802372	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs802373	0.82[ASN][1000 genomes]
rs802374	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs802376	0.82[ASN][1000 genomes]
rs802377	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs802378	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9641639	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs9641642	0.91[JPT][hapmap]
rs9649423	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120180200-120190200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120187400-120189200	Enhancers	GM12878-XiMat	blood

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