Variant report

Variant	rs6466748
Chromosome Location	chr7:120118660-120118661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120115063..120116822-chr7:120117642..120119650,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10233829	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245507	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10274789	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10275068	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276390	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10279267	0.88[ASN][1000 genomes]
rs10279812	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1029978	0.99[ASN][1000 genomes]
rs10488298	0.92[ASN][1000 genomes]
rs10488299	0.99[ASN][1000 genomes]
rs10953918	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11761401	0.99[ASN][1000 genomes]
rs11980474	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12531042	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12531730	0.99[ASN][1000 genomes]
rs12536754	1.00[ASN][1000 genomes]
rs12666810	0.91[ASN][1000 genomes]
rs17132703	0.99[ASN][1000 genomes]
rs2041679	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2041680	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58738977	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59732893	0.99[ASN][1000 genomes]
rs62473168	0.99[ASN][1000 genomes]
rs66473061	0.93[ASN][1000 genomes]
rs66597280	0.91[ASN][1000 genomes]
rs67181710	0.92[ASN][1000 genomes]
rs68060610	0.91[ASN][1000 genomes]
rs6948806	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6966670	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs702414	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs702415	0.84[AFR][1000 genomes]
rs702416	0.83[AFR][1000 genomes]
rs723908	0.98[ASN][1000 genomes]
rs7785421	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7785571	0.87[ASN][1000 genomes]
rs7788666	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7798075	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809573	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802332	0.82[AFR][1000 genomes]
rs802334	0.90[ASN][1000 genomes]
rs802335	0.90[ASN][1000 genomes]
rs802338	0.90[ASN][1000 genomes]
rs802339	0.90[ASN][1000 genomes]
rs802340	0.83[ASN][1000 genomes]
rs802344	0.97[ASN][1000 genomes]
rs802345	0.98[ASN][1000 genomes]
rs802346	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802347	0.98[ASN][1000 genomes]
rs802348	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802349	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802350	0.97[ASN][1000 genomes]
rs802351	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802352	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802353	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802354	0.98[ASN][1000 genomes]
rs802355	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs802356	0.98[ASN][1000 genomes]
rs802357	0.98[ASN][1000 genomes]
rs802358	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802359	0.97[ASN][1000 genomes]
rs802360	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs802362	0.90[ASN][1000 genomes]
rs802363	0.82[AFR][1000 genomes]
rs802364	0.84[AFR][1000 genomes]
rs802365	0.90[ASN][1000 genomes]
rs802367	0.84[AFR][1000 genomes]
rs802368	0.83[AFR][1000 genomes]
rs802370	0.90[ASN][1000 genomes]
rs802373	0.90[ASN][1000 genomes]
rs802374	0.90[ASN][1000 genomes]
rs802376	0.90[ASN][1000 genomes]
rs802377	0.90[ASN][1000 genomes]
rs802378	0.90[ASN][1000 genomes]
rs9641639	0.93[ASN][1000 genomes]
rs9641640	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1793998	chr7:120111409-120120322	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120112400-120120000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:120116800-120119400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:120117200-120119600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:120117400-120118800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:120117400-120126400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:120118000-120118800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:120118000-120119800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:120118200-120119200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:120118400-120119200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:120118600-120119200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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