Variant report

Variant	rs802360
Chromosome Location	chr7:120150516-120150517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10085878	0.83[CHB][hapmap]
rs10233829	0.96[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10245507	0.96[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10274789	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10275068	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10276390	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10278347	0.81[JPT][hapmap]
rs10279267	0.92[ASN][1000 genomes]
rs10279812	0.96[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1029978	0.87[ASN][1000 genomes]
rs10488298	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs10488299	0.96[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10953918	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11761401	0.87[ASN][1000 genomes]
rs11980474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12531042	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12531146	0.84[JPT][hapmap]
rs12531730	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12536754	0.86[ASN][1000 genomes]
rs12537274	0.81[JPT][hapmap]
rs12540785	0.82[YRI][hapmap]
rs12706290	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12706291	0.80[JPT][hapmap]
rs12706292	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs13224331	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs13241174	0.82[JPT][hapmap]
rs1358369	0.81[JPT][hapmap]
rs1405835	0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1569089	0.81[JPT][hapmap];0.89[YRI][hapmap]
rs17132703	0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17142829	0.89[AFR][1000 genomes]
rs1881023	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1881024	0.82[CHB][hapmap]
rs2041679	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2041680	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3814461	0.82[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4610678	0.81[JPT][hapmap]
rs4727909	0.89[AFR][1000 genomes]
rs4727910	0.82[JPT][hapmap]
rs4730965	0.81[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4730966	0.81[JPT][hapmap]
rs58738977	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59732893	0.84[ASN][1000 genomes]
rs62473168	0.84[ASN][1000 genomes]
rs6466748	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6466752	0.81[JPT][hapmap]
rs6948806	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6950967	0.81[JPT][hapmap]
rs6966670	0.96[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6978175	0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs702414	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs702415	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs702416	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs723908	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7785421	0.96[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7785571	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7788666	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7790906	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7791822	0.81[JPT][hapmap]
rs7791851	0.81[JPT][hapmap]
rs7798075	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7809573	0.84[ASN][1000 genomes]
rs802332	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs802333	0.95[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs802334	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs802335	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs802336	0.92[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs802337	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs802338	0.81[ASN][1000 genomes]
rs802339	0.87[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs802340	0.84[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs802344	0.87[ASN][1000 genomes]
rs802345	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802347	0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802348	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802350	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs802351	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802354	0.88[ASN][1000 genomes]
rs802355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802356	0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs802357	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs802358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802359	0.96[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs802362	0.88[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs802363	0.97[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs802364	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs802365	0.88[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs802366	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs802367	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs802368	0.97[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs802369	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs802370	0.81[ASN][1000 genomes]
rs802371	0.92[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs802372	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs802373	0.81[ASN][1000 genomes]
rs802374	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs802376	0.81[ASN][1000 genomes]
rs802377	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs802378	0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs9641639	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9641642	0.81[JPT][hapmap]
rs9649423	0.86[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs802360	KCND2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120143200-120152000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:120143600-120152000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:120143600-120159400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:120145600-120151800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:120146000-120151400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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