Variant report

Variant	rs802366
Chromosome Location	chr7:120161370-120161371
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120031308..120032856-chr7:120160102..120161912,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11980474	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12706290	0.81[AFR][1000 genomes]
rs13224331	0.84[AFR][1000 genomes]
rs1405835	0.83[AFR][1000 genomes]
rs17142829	0.82[AFR][1000 genomes]
rs4727909	0.82[AFR][1000 genomes]
rs702414	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs702415	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702416	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802332	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802333	0.94[ASN][1000 genomes]
rs802334	0.82[ASN][1000 genomes]
rs802335	0.82[ASN][1000 genomes]
rs802336	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802337	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802338	0.82[ASN][1000 genomes]
rs802339	0.82[ASN][1000 genomes]
rs802340	0.87[ASN][1000 genomes]
rs802346	0.86[ASN][1000 genomes]
rs802348	0.86[ASN][1000 genomes]
rs802349	0.86[ASN][1000 genomes]
rs802351	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs802352	0.86[ASN][1000 genomes]
rs802353	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs802355	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs802358	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs802360	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs802362	0.82[ASN][1000 genomes]
rs802363	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802364	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802365	0.82[ASN][1000 genomes]
rs802367	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802368	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802369	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802370	0.82[ASN][1000 genomes]
rs802371	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802372	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802373	0.82[ASN][1000 genomes]
rs802374	0.82[ASN][1000 genomes]
rs802376	0.82[ASN][1000 genomes]
rs802377	0.82[ASN][1000 genomes]
rs802378	0.82[ASN][1000 genomes]
rs9649423	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120152200-120162000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120159000-120161800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:120159400-120162000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:120159600-120162000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:120160400-120162000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:120160600-120161800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:120160600-120161800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:120160600-120162000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:120160600-120162000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:120160600-120162000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:120160600-120164600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:120161000-120162000	Weak transcription	H9 Cell Line	embryonic stem cell

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