Variant report

Variant	rs12666810
Chromosome Location	chr7:120112808-120112809
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10085878	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10230753	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10233829	0.91[ASN][1000 genomes]
rs10245507	0.90[ASN][1000 genomes]
rs10258480	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs10274789	0.90[ASN][1000 genomes]
rs10275068	0.91[ASN][1000 genomes]
rs10276390	0.93[ASN][1000 genomes]
rs10279267	0.82[ASN][1000 genomes]
rs10279812	0.90[ASN][1000 genomes]
rs1029978	0.90[ASN][1000 genomes]
rs10488292	1.00[CEU][hapmap]
rs10488298	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10488299	0.91[YRI][hapmap];0.90[ASN][1000 genomes]
rs10953918	0.90[ASN][1000 genomes]
rs11761401	0.90[ASN][1000 genomes]
rs12530902	1.00[CEU][hapmap]
rs12531042	0.93[ASN][1000 genomes]
rs12531689	1.00[CEU][hapmap]
rs12531730	0.90[ASN][1000 genomes]
rs12536754	0.91[ASN][1000 genomes]
rs12672579	1.00[CEU][hapmap]
rs12673578	1.00[CEU][hapmap]
rs1405836	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1527651	0.88[EUR][1000 genomes]
rs1527652	0.88[EUR][1000 genomes]
rs1527653	0.88[EUR][1000 genomes]
rs17132703	0.90[ASN][1000 genomes]
rs17142666	1.00[CEU][hapmap]
rs17142724	1.00[CEU][hapmap]
rs17142737	1.00[CEU][hapmap]
rs17142741	1.00[CEU][hapmap]
rs1881023	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1881024	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1997229	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2041679	0.90[ASN][1000 genomes]
rs2041680	0.90[ASN][1000 genomes]
rs41391947	1.00[CEU][hapmap]
rs4464900	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4610678	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4727910	1.00[CEU][hapmap]
rs4730963	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58738977	0.90[ASN][1000 genomes]
rs59732893	0.90[ASN][1000 genomes]
rs62473168	0.93[ASN][1000 genomes]
rs6466748	0.91[ASN][1000 genomes]
rs6466752	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs66473061	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66597280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67181710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68060610	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948806	0.90[ASN][1000 genomes]
rs6950967	1.00[CEU][hapmap]
rs6951226	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6966670	0.90[ASN][1000 genomes]
rs702415	0.83[ASN][1000 genomes]
rs702416	0.81[ASN][1000 genomes]
rs723908	0.91[YRI][hapmap];0.89[ASN][1000 genomes]
rs7781883	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7785421	0.93[ASN][1000 genomes]
rs7785571	0.82[ASN][1000 genomes]
rs7788666	0.90[ASN][1000 genomes]
rs7798075	0.91[ASN][1000 genomes]
rs7808260	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7809573	0.93[ASN][1000 genomes]
rs802332	0.83[ASN][1000 genomes]
rs802333	0.82[ASN][1000 genomes]
rs802334	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802335	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802336	0.82[ASN][1000 genomes]
rs802337	0.83[ASN][1000 genomes]
rs802338	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802339	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802344	0.89[ASN][1000 genomes]
rs802345	0.89[ASN][1000 genomes]
rs802347	0.91[YRI][hapmap];0.89[ASN][1000 genomes]
rs802350	0.91[YRI][hapmap];0.88[ASN][1000 genomes]
rs802354	0.89[ASN][1000 genomes]
rs802356	0.91[YRI][hapmap];0.89[ASN][1000 genomes]
rs802357	0.80[YRI][hapmap];0.89[ASN][1000 genomes]
rs802359	0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs802362	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802363	0.82[ASN][1000 genomes]
rs802364	0.82[ASN][1000 genomes]
rs802365	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802367	0.82[ASN][1000 genomes]
rs802368	0.81[ASN][1000 genomes]
rs802369	0.82[ASN][1000 genomes]
rs802370	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802371	0.82[ASN][1000 genomes]
rs802372	0.82[ASN][1000 genomes]
rs802373	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802374	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802376	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802377	1.00[CEU][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802378	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9641639	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9641640	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1793998	chr7:120111409-120120322	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120112400-120120000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:120112800-120113200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood

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