Variant report

Variant	rs1527651
Chromosome Location	chr7:120249435-120249436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10085878	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10230753	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10258480	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10488298	0.88[EUR][1000 genomes]
rs12537274	0.86[ASN][1000 genomes]
rs12666810	0.88[EUR][1000 genomes]
rs1358369	0.86[ASN][1000 genomes]
rs1405836	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1527652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527653	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1527657	0.85[ASN][1000 genomes]
rs1881023	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1881024	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1997229	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2402539	0.82[ASN][1000 genomes]
rs4464900	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4593467	0.87[ASN][1000 genomes]
rs4610678	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4730963	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6466752	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66473061	0.88[EUR][1000 genomes]
rs66597280	0.82[EUR][1000 genomes]
rs67181710	0.88[EUR][1000 genomes]
rs68060610	0.88[EUR][1000 genomes]
rs6951226	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7781883	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7790906	0.88[ASN][1000 genomes]
rs7808260	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802334	0.88[EUR][1000 genomes]
rs802335	0.88[EUR][1000 genomes]
rs802338	1.00[EUR][1000 genomes]
rs802339	1.00[EUR][1000 genomes]
rs802362	0.88[EUR][1000 genomes]
rs802365	0.88[EUR][1000 genomes]
rs802370	1.00[EUR][1000 genomes]
rs802373	1.00[EUR][1000 genomes]
rs802374	1.00[EUR][1000 genomes]
rs802376	1.00[EUR][1000 genomes]
rs802377	1.00[EUR][1000 genomes]
rs802378	1.00[EUR][1000 genomes]
rs9641639	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120249000-120249800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:120249200-120249600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr7:120249400-120251400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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