Variant report

Variant	rs2402539
Chromosome Location	chr7:120268303-120268304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10085878	0.85[CHD][hapmap];0.91[JPT][hapmap]
rs10230753	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10258480	0.95[JPT][hapmap]
rs10278347	0.81[GIH][hapmap];0.95[JPT][hapmap]
rs12530902	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12531146	0.94[JPT][hapmap]
rs12537274	1.00[CEU][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs12706290	0.81[GIH][hapmap];0.91[JPT][hapmap]
rs12706291	0.95[JPT][hapmap]
rs12706292	0.95[JPT][hapmap]
rs13224331	0.91[JPT][hapmap]
rs13241174	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs1358369	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs1405835	0.95[JPT][hapmap]
rs1405836	0.95[JPT][hapmap]
rs1527651	0.82[ASN][1000 genomes]
rs1527652	0.82[ASN][1000 genomes]
rs1527653	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1569089	0.95[JPT][hapmap]
rs1881023	0.86[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1881024	0.95[JPT][hapmap]
rs1918465	0.91[JPT][hapmap]
rs1997229	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3814461	0.95[JPT][hapmap]
rs4464900	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4610678	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4727910	0.95[JPT][hapmap]
rs4730965	0.81[GIH][hapmap];0.95[JPT][hapmap]
rs4730966	0.95[JPT][hapmap]
rs6466752	0.95[JPT][hapmap]
rs6950967	0.87[CHD][hapmap];0.95[JPT][hapmap]
rs6951226	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6978175	0.95[JPT][hapmap]
rs6979618	0.95[JPT][hapmap]
rs702416	0.81[JPT][hapmap]
rs7781883	0.88[ASN][1000 genomes]
rs7790906	0.87[CHD][hapmap];0.95[JPT][hapmap]
rs7791822	0.81[GIH][hapmap];0.95[JPT][hapmap]
rs7791851	0.81[GIH][hapmap];0.95[JPT][hapmap]
rs7808260	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs802332	0.80[JPT][hapmap]
rs802334	0.80[JPT][hapmap]
rs802335	0.81[JPT][hapmap]
rs802336	0.81[JPT][hapmap]
rs802339	0.90[JPT][hapmap]
rs802340	0.85[JPT][hapmap]
rs802362	0.81[JPT][hapmap]
rs802365	0.81[JPT][hapmap]
rs802367	0.81[JPT][hapmap]
rs802371	0.81[JPT][hapmap]
rs802372	0.81[JPT][hapmap]
rs802374	0.81[JPT][hapmap]
rs802377	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs802378	0.80[JPT][hapmap]
rs9641642	0.95[JPT][hapmap]
rs9649423	0.95[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2402539	CAV1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120267000-120272800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120267600-120271400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120268200-120268800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:120268200-120268800	Enhancers	Adipose Nuclei	Adipose

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