Variant report

Variant	rs66473061
Chromosome Location	chr7:120124873-120124874
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120115577..120117354-chr7:120124597..120127119,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10085878	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10230753	0.88[EUR][1000 genomes]
rs10233829	0.93[ASN][1000 genomes]
rs10245507	0.92[ASN][1000 genomes]
rs10258480	0.81[ASN][1000 genomes]
rs10274789	0.92[ASN][1000 genomes]
rs10275068	0.93[ASN][1000 genomes]
rs10276390	0.91[ASN][1000 genomes]
rs10279267	0.82[ASN][1000 genomes]
rs10279812	0.92[ASN][1000 genomes]
rs1029978	0.92[ASN][1000 genomes]
rs10488298	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10488299	0.92[ASN][1000 genomes]
rs10953913	0.82[AMR][1000 genomes]
rs10953918	0.92[ASN][1000 genomes]
rs11761401	0.92[ASN][1000 genomes]
rs11980474	0.80[ASN][1000 genomes]
rs12531042	0.91[ASN][1000 genomes]
rs12531730	0.92[ASN][1000 genomes]
rs12536754	0.93[ASN][1000 genomes]
rs12537274	0.80[ASN][1000 genomes]
rs12666810	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1358369	0.80[ASN][1000 genomes]
rs1405836	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1527651	0.88[EUR][1000 genomes]
rs1527652	0.88[EUR][1000 genomes]
rs1527653	0.88[EUR][1000 genomes]
rs17132703	0.92[ASN][1000 genomes]
rs17142724	0.82[AMR][1000 genomes]
rs1881023	0.88[EUR][1000 genomes]
rs1881024	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1997229	0.88[EUR][1000 genomes]
rs2041679	0.92[ASN][1000 genomes]
rs2041680	0.92[ASN][1000 genomes]
rs4464900	0.88[EUR][1000 genomes]
rs4610678	0.88[EUR][1000 genomes]
rs4730963	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58738977	0.92[ASN][1000 genomes]
rs59732893	0.92[ASN][1000 genomes]
rs62473168	0.92[ASN][1000 genomes]
rs6466748	0.93[ASN][1000 genomes]
rs6466752	0.88[EUR][1000 genomes]
rs66597280	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67181710	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67430445	0.82[AMR][1000 genomes]
rs67560031	0.82[AMR][1000 genomes]
rs68060610	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948806	0.92[ASN][1000 genomes]
rs6951226	0.88[EUR][1000 genomes]
rs6966670	0.92[ASN][1000 genomes]
rs702414	0.80[ASN][1000 genomes]
rs702415	0.85[ASN][1000 genomes]
rs702416	0.83[ASN][1000 genomes]
rs723908	0.91[ASN][1000 genomes]
rs7781883	0.88[EUR][1000 genomes]
rs7785421	0.91[ASN][1000 genomes]
rs7785571	0.81[ASN][1000 genomes]
rs7788666	0.92[ASN][1000 genomes]
rs7798075	0.93[ASN][1000 genomes]
rs7808260	0.88[EUR][1000 genomes]
rs7809573	0.92[ASN][1000 genomes]
rs802332	0.85[ASN][1000 genomes]
rs802333	0.84[ASN][1000 genomes]
rs802334	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802335	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802336	0.84[ASN][1000 genomes]
rs802337	0.84[ASN][1000 genomes]
rs802338	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802339	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802344	0.91[ASN][1000 genomes]
rs802345	0.91[ASN][1000 genomes]
rs802346	0.80[ASN][1000 genomes]
rs802347	0.91[ASN][1000 genomes]
rs802348	0.80[ASN][1000 genomes]
rs802349	0.80[ASN][1000 genomes]
rs802350	0.90[ASN][1000 genomes]
rs802351	0.80[ASN][1000 genomes]
rs802352	0.80[ASN][1000 genomes]
rs802353	0.80[ASN][1000 genomes]
rs802354	0.91[ASN][1000 genomes]
rs802355	0.80[ASN][1000 genomes]
rs802356	0.91[ASN][1000 genomes]
rs802357	0.91[ASN][1000 genomes]
rs802358	0.80[ASN][1000 genomes]
rs802359	0.91[ASN][1000 genomes]
rs802362	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802363	0.84[ASN][1000 genomes]
rs802364	0.84[ASN][1000 genomes]
rs802365	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802367	0.84[ASN][1000 genomes]
rs802368	0.82[ASN][1000 genomes]
rs802369	0.84[ASN][1000 genomes]
rs802370	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802371	0.84[ASN][1000 genomes]
rs802372	0.84[ASN][1000 genomes]
rs802373	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802374	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802376	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802377	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs802378	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9641639	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641640	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120117400-120126400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120119200-120126200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:120119600-120126200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:120119800-120126200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:120121200-120131200	Weak transcription	GM12878-XiMat	blood
6	chr7:120122600-120139400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links