Variant report
| Variant | rs17347636 |
|---|---|
| Chromosome Location | chr7:120202286-120202287 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10156047 | 0.90[ASN][1000 genomes] |
| rs10156120 | 1.00[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs10239849 | 1.00[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs10264724 | 0.90[ASN][1000 genomes] |
| rs10277228 | 1.00[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs10488289 | 1.00[CHB][hapmap] |
| rs10488290 | 1.00[CHB][hapmap] |
| rs10488293 | 1.00[CHB][hapmap] |
| rs10953910 | 1.00[CHB][hapmap] |
| rs10953911 | 1.00[CHB][hapmap] |
| rs11762819 | 1.00[CHB][hapmap] |
| rs11765060 | 0.90[ASN][1000 genomes] |
| rs11765076 | 1.00[CHB][hapmap] |
| rs11769050 | 1.00[CHB][hapmap] |
| rs11769783 | 1.00[CHB][hapmap] |
| rs11772156 | 1.00[CHB][hapmap] |
| rs11970921 | 1.00[CHB][hapmap] |
| rs11972808 | 1.00[CHB][hapmap] |
| rs17324055 | 1.00[CHB][hapmap] |
| rs17324726 | 1.00[CHB][hapmap] |
| rs17376905 | 1.00[CHB][hapmap] |
| rs17376968 | 1.00[CHB][hapmap] |
| rs1861064 | 1.00[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs62472313 | 0.90[ASN][1000 genomes] |
| rs62472316 | 0.90[ASN][1000 genomes] |
| rs62472317 | 0.90[ASN][1000 genomes] |
| rs62472320 | 0.90[ASN][1000 genomes] |
| rs718805 | 1.00[CHB][hapmap] |
| rs73217256 | 1.00[ASN][1000 genomes] |
| rs73217291 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7794826 | 1.00[CHB][hapmap] |
| rs7805931 | 0.90[ASN][1000 genomes] |
| rs7809257 | 1.00[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs917901 | 1.00[CHB][hapmap];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516686 | chr7:120015843-120223084 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv889117 | chr7:120122040-120266458 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:120200400-120223000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
