Variant report

Variant	rs73217291
Chromosome Location	chr7:120228834-120228835
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10156047	0.90[ASN][1000 genomes]
rs10156120	0.90[ASN][1000 genomes]
rs10239849	0.90[ASN][1000 genomes]
rs10264724	0.90[ASN][1000 genomes]
rs10277228	0.90[ASN][1000 genomes]
rs11765060	0.90[ASN][1000 genomes]
rs17347636	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861064	0.90[ASN][1000 genomes]
rs62472313	0.90[ASN][1000 genomes]
rs62472316	0.90[ASN][1000 genomes]
rs62472317	0.90[ASN][1000 genomes]
rs62472320	0.90[ASN][1000 genomes]
rs73217256	1.00[ASN][1000 genomes]
rs7805931	0.90[ASN][1000 genomes]
rs7809257	0.90[ASN][1000 genomes]
rs917901	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120225000-120230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:120225200-120229800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:120225600-120249000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:120227000-120229200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:120228600-120229000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:120228600-120229000	Flanking Active TSS	Liver	Liver
7	chr7:120228600-120229000	Enhancers	HUVEC	blood vessel
8	chr7:120228600-120229200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:120228600-120230000	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links