Variant report

Variant	rs10239849
Chromosome Location	chr7:120111905-120111906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:120109721..120112397-chr7:120114908..120116475,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10156047	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10156120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10264724	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10277228	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10488286	0.84[CEU][hapmap]
rs10488289	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10488290	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10488293	1.00[CEU][hapmap]
rs10953909	0.92[CEU][hapmap]
rs10953910	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10953911	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11762819	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11765060	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765076	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11769050	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11769340	0.84[CEU][hapmap]
rs11769783	1.00[CEU][hapmap]
rs11772156	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11970921	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11972808	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11982510	0.83[CEU][hapmap]
rs17323788	0.92[CEU][hapmap]
rs17324055	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17324726	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17347636	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17376905	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17376968	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1861064	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34850246	0.84[CEU][hapmap]
rs55868329	0.81[EUR][1000 genomes]
rs62472313	1.00[ASN][1000 genomes]
rs62472316	1.00[ASN][1000 genomes]
rs62472317	1.00[ASN][1000 genomes]
rs62472320	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62473168	0.80[EUR][1000 genomes]
rs6466742	0.84[CEU][hapmap]
rs718805	1.00[CHB][hapmap]
rs73217256	0.90[ASN][1000 genomes]
rs73217291	0.90[ASN][1000 genomes]
rs736612	0.92[CEU][hapmap]
rs7778213	0.92[CEU][hapmap]
rs7794826	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7805931	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs917901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1793998	chr7:120111409-120120322	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120101800-120117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120103800-120122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:120105000-120112600	Weak transcription	GM12878-XiMat	blood

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