Variant report

Variant	rs11767260
Chromosome Location	chr7:119903924-119903925
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119900140..119902051-chr7:119902421..119904871,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10488286	0.82[AFR][1000 genomes]
rs11487122	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11760262	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11763966	0.99[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11768610	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11773232	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11982510	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17374849	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17594101	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17594220	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34850246	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs55680276	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs55963403	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56244901	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62469500	0.87[ASN][1000 genomes]
rs62469501	0.87[ASN][1000 genomes]
rs62469503	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62469505	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62469506	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62469507	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62470461	0.95[ASN][1000 genomes]
rs62470532	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6466742	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6942451	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6942755	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6969916	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6978586	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73213448	0.87[ASN][1000 genomes]
rs73213458	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7777091	0.87[ASN][1000 genomes]
rs7786492	0.87[ASN][1000 genomes]
rs7800545	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119898200-119906600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:119898400-119907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:119903800-119904200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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