Variant report

Variant	rs6956408
Chromosome Location	chr7:119821088-119821089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:119820758..119822303-chr7:119824321..119826929,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10224017	0.82[EUR][1000 genomes]
rs10224700	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10224809	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10237275	0.81[ASN][1000 genomes]
rs10250387	0.81[ASN][1000 genomes]
rs10252729	0.86[ASN][1000 genomes]
rs10269967	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10278455	0.86[ASN][1000 genomes]
rs11487122	0.87[EUR][1000 genomes]
rs17142555	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17142585	0.81[ASN][1000 genomes]
rs17594101	0.86[EUR][1000 genomes]
rs17594220	0.86[EUR][1000 genomes]
rs2190183	0.81[ASN][1000 genomes]
rs28532220	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735339	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3814463	0.82[EUR][1000 genomes]
rs55963403	0.87[EUR][1000 genomes]
rs56244901	0.86[EUR][1000 genomes]
rs60578704	0.87[ASN][1000 genomes]
rs62469500	0.95[EUR][1000 genomes]
rs62469501	0.96[EUR][1000 genomes]
rs62469503	0.87[EUR][1000 genomes]
rs62469505	0.87[EUR][1000 genomes]
rs62469506	0.86[EUR][1000 genomes]
rs62469507	0.86[EUR][1000 genomes]
rs6466735	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6943223	0.83[ASN][1000 genomes]
rs6956570	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956643	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6969916	0.85[EUR][1000 genomes]
rs6973947	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6974349	0.86[ASN][1000 genomes]
rs6978586	0.85[EUR][1000 genomes]
rs73213448	0.96[EUR][1000 genomes]
rs73213458	0.85[EUR][1000 genomes]
rs7777091	0.96[EUR][1000 genomes]
rs7781529	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7782622	0.82[ASN][1000 genomes]
rs7786492	0.96[EUR][1000 genomes]
rs7792688	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7795487	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119819400-119822000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:119821000-119822200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:119821000-119824200	Weak transcription	Adipose Nuclei	Adipose
4	chr7:119821000-119824200	Weak transcription	Aorta	Aorta

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