Variant report

Variant	rs60578704
Chromosome Location	chr7:119824977-119824978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10237275	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10241520	0.88[EUR][1000 genomes]
rs10247464	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10250387	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10251877	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10252729	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10278455	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10279729	0.86[AMR][1000 genomes]
rs17142555	0.87[ASN][1000 genomes]
rs17142585	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2107994	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2190183	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28532220	0.87[ASN][1000 genomes]
rs58778277	0.82[EUR][1000 genomes]
rs62469497	0.82[EUR][1000 genomes]
rs6466739	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6943223	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6956408	0.87[ASN][1000 genomes]
rs6956570	0.87[ASN][1000 genomes]
rs6973947	0.85[ASN][1000 genomes]
rs6974349	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7782622	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119821800-119825000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:119823600-119826600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:119824200-119825800	Enhancers	Adipose Nuclei	Adipose
4	chr7:119824400-119827800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:119824800-119826000	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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