Variant report

Variant	rs6466735
Chromosome Location	chr7:119819360-119819361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10224700	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10224809	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10252729	0.81[ASN][1000 genomes]
rs10269967	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10278455	0.81[ASN][1000 genomes]
rs1035014	0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs11487122	0.80[EUR][1000 genomes]
rs12533932	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs12666459	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs12706276	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17142555	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1860704	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs1990429	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2191736	0.81[CHD][hapmap]
rs2402525	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs2402526	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs28532220	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3814463	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs4730954	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs4730955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4730956	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs55963403	0.80[EUR][1000 genomes]
rs62469500	0.94[EUR][1000 genomes]
rs62469501	0.95[EUR][1000 genomes]
rs62469503	0.80[EUR][1000 genomes]
rs62469505	0.80[EUR][1000 genomes]
rs6466740	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6956408	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6956570	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6956643	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6973947	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6974349	0.81[ASN][1000 genomes]
rs73213448	0.95[EUR][1000 genomes]
rs7777091	0.95[EUR][1000 genomes]
rs7781529	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7786492	0.95[EUR][1000 genomes]
rs7790816	0.82[ASW][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap]
rs7792688	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7792980	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs7805413	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831113	chr7:119683515-119886277	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119808600-119820600	Weak transcription	NHLF	lung
2	chr7:119813800-119819400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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