Variant report

Variant	rs12711742
Chromosome Location	chr2:113571072-113571073
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113570424..113572212-chr2:113575951..113578663,2	MCF-7	breast:
2	chr2:113569914..113572061-chr2:113574224..113576848,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10210810	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11687733	0.86[EUR][1000 genomes]
rs17597976	0.85[EUR][1000 genomes]
rs2048874	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs6542097	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7368977	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7599171	0.80[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113566400-113572400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:113567400-113575800	Weak transcription	Brain Substantia Nigra	brain
3	chr2:113568400-113572200	Enhancers	HUVEC	blood vessel
4	chr2:113568400-113573000	Enhancers	HepG2	liver
5	chr2:113568600-113571600	Enhancers	NHEK	skin
6	chr2:113568600-113575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:113568600-113575200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:113568800-113571800	Enhancers	Adipose Nuclei	Adipose
9	chr2:113568800-113572000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:113568800-113572200	Enhancers	HMEC	breast
11	chr2:113568800-113572400	Enhancers	NH-A	brain
12	chr2:113568800-113572400	Enhancers	NHDF-Ad	bronchial
13	chr2:113569000-113571400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr2:113569000-113571800	Enhancers	Fetal Stomach	stomach
15	chr2:113569000-113572200	Enhancers	Fetal Muscle Leg	muscle
16	chr2:113569000-113572200	Enhancers	Placenta	Placenta
17	chr2:113569000-113572200	Enhancers	Osteobl	bone
18	chr2:113569000-113572400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:113569000-113572400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:113569000-113576000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:113569200-113571400	Enhancers	Stomach Smooth Muscle	stomach
22	chr2:113569200-113572400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr2:113569400-113571200	Weak transcription	Pancreas	Pancrea
24	chr2:113569400-113571400	Weak transcription	Right Ventricle	heart
25	chr2:113569400-113571600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr2:113569400-113571600	Weak transcription	Right Atrium	heart
27	chr2:113569400-113572000	Weak transcription	Psoas Muscle	Psoas
28	chr2:113569400-113572200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr2:113569400-113572400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:113569400-113576200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr2:113569600-113571200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:113569600-113574600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr2:113569800-113571200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr2:113569800-113571600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:113569800-113571600	Weak transcription	Fetal Thymus	thymus
36	chr2:113569800-113572000	Weak transcription	Gastric	stomach
37	chr2:113570000-113571400	Flanking Active TSS	K562	blood
38	chr2:113570000-113572400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:113570000-113572800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr2:113570200-113571200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr2:113570400-113571400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr2:113570400-113571400	Weak transcription	Hela-S3	cervix
43	chr2:113570400-113571600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr2:113570400-113571800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:113570400-113571800	Weak transcription	A549	lung
46	chr2:113570400-113572400	Enhancers	GM12878-XiMat	blood
47	chr2:113570400-113574200	Weak transcription	Liver	Liver
48	chr2:113570600-113571200	Enhancers	Fetal Heart	heart
49	chr2:113570600-113571600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr2:113570600-113571600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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