Variant report

Variant	rs6542097
Chromosome Location	chr2:113570581-113570582
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113554665..113556955-chr2:113568287..113571042,2	K562	blood:
2	chr2:113570424..113572212-chr2:113575951..113578663,2	MCF-7	breast:
3	chr2:113519926..113522367-chr2:113568857..113570808,2	K562	blood:
4	chr2:113569914..113572061-chr2:113574224..113576848,2	K562	blood:

Variant related genes	Relation type
ENSG00000169607	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10210810	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11687733	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12711742	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17597976	0.85[EUR][1000 genomes]
rs2048874	0.91[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs3917365	0.92[GIH][hapmap]
rs7368977	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7599171	0.80[EUR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113566400-113572400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:113567400-113575800	Weak transcription	Brain Substantia Nigra	brain
3	chr2:113568400-113572200	Enhancers	HUVEC	blood vessel
4	chr2:113568400-113573000	Enhancers	HepG2	liver
5	chr2:113568600-113571600	Enhancers	NHEK	skin
6	chr2:113568600-113575000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:113568600-113575200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:113568800-113571000	Enhancers	Spleen	Spleen
9	chr2:113568800-113571000	Enhancers	NHLF	lung
10	chr2:113568800-113571800	Enhancers	Adipose Nuclei	Adipose
11	chr2:113568800-113572000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:113568800-113572200	Enhancers	HMEC	breast
13	chr2:113568800-113572400	Enhancers	NH-A	brain
14	chr2:113568800-113572400	Enhancers	NHDF-Ad	bronchial
15	chr2:113569000-113570600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:113569000-113570600	Enhancers	Left Ventricle	heart
17	chr2:113569000-113570600	Enhancers	Lung	lung
18	chr2:113569000-113570800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:113569000-113570800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:113569000-113570800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr2:113569000-113570800	Enhancers	Esophagus	oesophagus
22	chr2:113569000-113571000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:113569000-113571400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr2:113569000-113571800	Enhancers	Fetal Stomach	stomach
25	chr2:113569000-113572200	Enhancers	Fetal Muscle Leg	muscle
26	chr2:113569000-113572200	Enhancers	Placenta	Placenta
27	chr2:113569000-113572200	Enhancers	Osteobl	bone
28	chr2:113569000-113572400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:113569000-113572400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:113569000-113576000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:113569200-113570600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr2:113569200-113570600	Enhancers	Primary T cells fromperipheralblood	blood
33	chr2:113569200-113570600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr2:113569200-113570800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr2:113569200-113570800	Enhancers	Small Intestine	intestine
36	chr2:113569200-113571000	Enhancers	H9 Cell Line	embryonic stem cell
37	chr2:113569200-113571400	Enhancers	Stomach Smooth Muscle	stomach
38	chr2:113569200-113572400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr2:113569400-113570600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr2:113569400-113570600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr2:113569400-113570800	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr2:113569400-113571000	Enhancers	Primary T cells from cord blood	blood
43	chr2:113569400-113571200	Weak transcription	Pancreas	Pancrea
44	chr2:113569400-113571400	Weak transcription	Right Ventricle	heart
45	chr2:113569400-113571600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr2:113569400-113571600	Weak transcription	Right Atrium	heart
47	chr2:113569400-113572000	Weak transcription	Psoas Muscle	Psoas
48	chr2:113569400-113572200	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr2:113569400-113572400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr2:113569400-113576200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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