Variant report

Variant	rs12716878
Chromosome Location	chr16:79598840-79598841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79589254..79592175-chr16:79597127..79599892,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12928988	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12931036	1.00[ASN][1000 genomes]
rs12931431	1.00[ASN][1000 genomes]
rs12932040	1.00[ASN][1000 genomes]
rs12934675	1.00[ASN][1000 genomes]
rs12935497	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477421	0.85[AFR][1000 genomes]
rs16950681	0.91[AFR][1000 genomes]
rs17756353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757084	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757421	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757806	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34177926	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34210206	1.00[ASN][1000 genomes]
rs35056961	1.00[ASN][1000 genomes]
rs35159577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6564677	1.00[ASN][1000 genomes]
rs6564679	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67976943	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806542	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806544	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1060796	chr16:79590617-79609857	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1064997	chr16:79591279-79608618	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1056252	chr16:79591279-79608831	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79595000-79599000	Weak transcription	Adipose Nuclei	Adipose
2	chr16:79596000-79599000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr16:79596400-79599000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:79597800-79599400	Enhancers	Fetal Intestine Large	intestine
5	chr16:79597800-79599400	Enhancers	Fetal Intestine Small	intestine
6	chr16:79598200-79599000	Flanking Active TSS	Liver	Liver
7	chr16:79598400-79603200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr16:79598600-79599000	Enhancers	Duodenum Mucosa	Duodenum
9	chr16:79598600-79603200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr16:79598600-79603200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr16:79598600-79604800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr16:79598800-79599200	Bivalent Enhancer	HepG2	liver
13	chr16:79598800-79605600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:79598800-79606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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