Variant report

Variant	rs6564679
Chromosome Location	chr16:79595961-79595962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12716878	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12928988	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12931036	1.00[ASN][1000 genomes]
rs12931431	1.00[ASN][1000 genomes]
rs12932040	1.00[ASN][1000 genomes]
rs12934675	1.00[ASN][1000 genomes]
rs12935497	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757084	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757421	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757806	0.97[EUR][1000 genomes]
rs34177926	0.97[EUR][1000 genomes]
rs34210206	1.00[ASN][1000 genomes]
rs35056961	1.00[ASN][1000 genomes]
rs35159577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6564677	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67976943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187192	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197922	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806544	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2754467	chr16:79539799-79598399	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2763145	chr16:79589827-79595961	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1060796	chr16:79590617-79609857	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1064997	chr16:79591279-79608618	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1056252	chr16:79591279-79608831	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79594800-79597000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:79595000-79599000	Weak transcription	Adipose Nuclei	Adipose
3	chr16:79595800-79596200	Enhancers	Brain Anterior Caudate	brain
4	chr16:79595800-79597000	Enhancers	Brain Substantia Nigra	brain
5	chr16:79595800-79597200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr16:79595800-79598200	Enhancers	Liver	Liver

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