Variant report

Variant	rs12931036
Chromosome Location	chr16:79605846-79605847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12716878	1.00[ASN][1000 genomes]
rs12928988	1.00[ASN][1000 genomes]
rs12931431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12932040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12934675	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12935497	1.00[ASN][1000 genomes]
rs17756353	1.00[ASN][1000 genomes]
rs17757084	1.00[ASN][1000 genomes]
rs17757421	1.00[ASN][1000 genomes]
rs34210206	1.00[ASN][1000 genomes]
rs35056961	1.00[ASN][1000 genomes]
rs35159577	1.00[ASN][1000 genomes]
rs6564677	1.00[ASN][1000 genomes]
rs6564679	1.00[ASN][1000 genomes]
rs67976943	1.00[ASN][1000 genomes]
rs7187192	1.00[ASN][1000 genomes]
rs7197922	1.00[ASN][1000 genomes]
rs72806542	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1060796	chr16:79590617-79609857	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1064997	chr16:79591279-79608618	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1056252	chr16:79591279-79608831	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1063641	chr16:79591279-79614168	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79598800-79606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:79604400-79606000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr16:79604800-79607000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr16:79605000-79606000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:79605000-79606000	Active TSS	NHDF-Ad	bronchial
6	chr16:79605000-79606400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr16:79605000-79606600	Enhancers	Fetal Stomach	stomach
8	chr16:79605000-79606800	Enhancers	Psoas Muscle	Psoas
9	chr16:79605200-79606000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr16:79605200-79606600	Enhancers	Fetal Muscle Leg	muscle
11	chr16:79605200-79606800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:79605200-79607000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr16:79605400-79606000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr16:79605400-79606800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr16:79605600-79606200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr16:79605600-79606600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr16:79605600-79606600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr16:79605600-79606600	Enhancers	Brain Anterior Caudate	brain
19	chr16:79605600-79606600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr16:79605600-79606800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr16:79605600-79606800	Enhancers	Ovary	ovary
22	chr16:79605800-79606000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr16:79605800-79606000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr16:79605800-79606000	Enhancers	Adipose Nuclei	Adipose
25	chr16:79605800-79606000	Active TSS	Right Atrium	heart
26	chr16:79605800-79606200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr16:79605800-79606200	Flanking Active TSS	Aorta	Aorta
28	chr16:79605800-79606400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr16:79605800-79606400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr16:79605800-79606400	Enhancers	Brain Germinal Matrix	brain
31	chr16:79605800-79606600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr16:79605800-79607000	Enhancers	Fetal Lung	lung

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