Variant report

Variant	rs127171
Chromosome Location	chr6:134325409-134325410
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134324261..134326024-chr6:134328122..134330657,2	MCF-7	breast:
2	chr6:134324417..134327144-chr6:134347973..134349876,2	K562	blood:
3	chr6:134317498..134321618-chr6:134323744..134327295,4	MCF-7	breast:
4	chr6:134317830..134320441-chr6:134322553..134326763,4	K562	blood:
5	chr6:134322753..134327891-chr6:134329943..134333347,6	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs229904	0.85[CEU][hapmap]
rs229913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs229915	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2811673	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2811676	0.83[GIH][hapmap];0.92[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
3	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:134309400-134327600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:134313800-134336400	Weak transcription	Psoas Muscle	Psoas
7	chr6:134314200-134328000	Weak transcription	Lung	lung
8	chr6:134314400-134341800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:134315200-134328400	Weak transcription	Fetal Lung	lung
10	chr6:134315200-134341200	Weak transcription	Fetal Heart	heart
11	chr6:134315200-134342200	Weak transcription	Right Ventricle	heart
12	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
13	chr6:134317000-134328000	Weak transcription	Gastric	stomach
14	chr6:134317000-134335200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:134320000-134328000	Weak transcription	Pancreas	Pancrea
17	chr6:134321000-134328400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:134323800-134326200	Enhancers	HSMM	muscle
19	chr6:134324000-134326200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:134324400-134328000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:134324400-134339400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:134324600-134341800	Weak transcription	Brain Angular Gyrus	brain
23	chr6:134324800-134326000	Enhancers	HSMMtube	muscle
24	chr6:134325000-134325800	Enhancers	Brain Hippocampus Middle	brain
25	chr6:134325000-134326200	Enhancers	NH-A	brain
26	chr6:134325000-134328000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:134325000-134341800	Weak transcription	Aorta	Aorta
28	chr6:134325000-134341800	Weak transcription	Brain Anterior Caudate	brain
29	chr6:134325000-134349600	Weak transcription	Left Ventricle	heart
30	chr6:134325200-134325600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:134325200-134326400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:134325200-134326600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:134325400-134326400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:134325400-134326400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:134325400-134326600	Weak transcription	Brain Substantia Nigra	brain
36	chr6:134325400-134327200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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