Variant report

Variant	rs2811673
Chromosome Location	chr6:134331737-134331738
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs127171	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs229913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs229915	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2627239	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2811676	0.95[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:134313800-134336400	Weak transcription	Psoas Muscle	Psoas
3	chr6:134314400-134341800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:134315200-134341200	Weak transcription	Fetal Heart	heart
5	chr6:134315200-134342200	Weak transcription	Right Ventricle	heart
6	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
7	chr6:134317000-134335200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:134324400-134339400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:134324600-134341800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:134325000-134341800	Weak transcription	Aorta	Aorta
12	chr6:134325000-134341800	Weak transcription	Brain Anterior Caudate	brain
13	chr6:134325000-134349600	Weak transcription	Left Ventricle	heart
14	chr6:134326400-134339000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
16	chr6:134328800-134349400	Weak transcription	Fetal Lung	lung
17	chr6:134329400-134338400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:134331000-134333000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:134331600-134331800	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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