Variant report

Variant	rs229913
Chromosome Location	chr6:134323711-134323712
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134317513..134320913-chr6:134321650..134324060,3	K562	blood:
2	chr6:134317036..134319141-chr6:134322847..134324478,2	MCF-7	breast:
3	chr6:134317830..134320441-chr6:134322553..134326763,4	K562	blood:
4	chr6:134322753..134327891-chr6:134329943..134333347,6	K562	blood:
5	chr6:134307630..134309585-chr6:134323063..134324734,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs127171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs229904	0.81[CEU][hapmap]
rs229915	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2811673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:134304800-134324000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
5	chr6:134306000-134324000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:134306000-134324000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:134309400-134327600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:134313800-134336400	Weak transcription	Psoas Muscle	Psoas
11	chr6:134314200-134324000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:134314200-134324200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:134314200-134328000	Weak transcription	Lung	lung
14	chr6:134314400-134341800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:134315200-134323800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:134315200-134324000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:134315200-134328400	Weak transcription	Fetal Lung	lung
18	chr6:134315200-134341200	Weak transcription	Fetal Heart	heart
19	chr6:134315200-134342200	Weak transcription	Right Ventricle	heart
20	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
21	chr6:134317000-134328000	Weak transcription	Gastric	stomach
22	chr6:134317000-134335200	Weak transcription	Fetal Intestine Small	intestine
23	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:134318200-134324000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:134318600-134324000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:134320000-134328000	Weak transcription	Pancreas	Pancrea
27	chr6:134320400-134324600	Weak transcription	Liver	Liver
28	chr6:134321000-134324000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:134321000-134324000	Weak transcription	Aorta	Aorta
30	chr6:134321000-134328400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:134322000-134324400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:134322200-134324200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:134322400-134324000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:134322400-134324200	Weak transcription	Left Ventricle	heart
35	chr6:134323200-134323800	Enhancers	NH-A	brain
36	chr6:134323200-134324200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:134323200-134324400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:134323200-134324600	Enhancers	Brain Angular Gyrus	brain
39	chr6:134323200-134325200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:134323400-134323800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:134323600-134324000	Enhancers	Brain Hippocampus Middle	brain
42	chr6:134323600-134324000	Enhancers	Brain Substantia Nigra	brain
43	chr6:134323600-134324000	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr6:134323600-134324200	Enhancers	HSMMtube	muscle
45	chr6:134323600-134324600	Enhancers	Fetal Brain Male	brain
46	chr6:134323600-134324800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:134323600-134324800	Enhancers	K562	blood
48	chr6:134323600-134325000	Enhancers	Osteobl	bone
49	chr6:134323600-134325400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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