Variant report

Variant	rs12723676
Chromosome Location	chr1:151652911-151652912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151642498..151644788-chr1:151650470..151653189,2	MCF-7	breast:
2	chr1:151652669..151654682-chr1:151678616..151680856,2	K562	blood:
3	chr1:151512755..151514300-chr1:151651722..151653367,2	MCF-7	breast:
4	chr1:151650313..151653139-chr2:15236281..15237910,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232536	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000143367	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11808761	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196350	0.82[ASN][1000 genomes]
rs1196462	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196466	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1196468	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12122920	0.84[ASN][1000 genomes]
rs12128050	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35086333	0.82[ASN][1000 genomes]
rs41263702	0.89[EUR][1000 genomes]
rs61818467	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs939592	0.83[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
2	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
4	chr1:151610600-151665000	Weak transcription	Lung	lung
5	chr1:151611600-151668200	Weak transcription	Gastric	stomach
6	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:151627200-151655600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr1:151627200-151659800	Weak transcription	Spleen	Spleen
10	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
11	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
13	chr1:151632200-151665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:151632400-151664400	Weak transcription	Thymus	Thymus
16	chr1:151632600-151653000	Weak transcription	HSMMtube	muscle
17	chr1:151634600-151657600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:151635000-151654600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:151638400-151653200	Weak transcription	Fetal Heart	heart
20	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
21	chr1:151638800-151653200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:151642000-151665000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr1:151642200-151653000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr1:151642200-151659600	Weak transcription	HepG2	liver
25	chr1:151642200-151665000	Weak transcription	K562	blood
26	chr1:151642800-151656600	Weak transcription	Fetal Kidney	kidney
27	chr1:151642800-151665000	Weak transcription	Fetal Brain Female	brain
28	chr1:151643000-151655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:151643000-151665000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr1:151643200-151653200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:151643200-151659000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr1:151643600-151665000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr1:151643800-151655800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:151643800-151669800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:151644000-151653000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:151644000-151653000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr1:151644000-151653200	Weak transcription	Adipose Nuclei	Adipose
38	chr1:151644000-151655600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr1:151644000-151655600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr1:151644000-151664600	Weak transcription	Fetal Thymus	thymus
41	chr1:151644000-151665000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr1:151644000-151665000	Weak transcription	Brain Angular Gyrus	brain
43	chr1:151644000-151665000	Weak transcription	Pancreas	Pancrea
44	chr1:151644200-151653000	Weak transcription	Colon Smooth Muscle	Colon
45	chr1:151644200-151653200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:151644200-151655600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:151644200-151664400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:151644200-151665000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr1:151644200-151665000	Weak transcription	Ovary	ovary
50	chr1:151644200-151665200	Weak transcription	Brain Substantia Nigra	brain

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