Variant report

Variant	rs41263702
Chromosome Location	chr1:151686081-151686082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151677702..151679234-chr1:151685663..151687582,2	K562	blood:
2	chr1:151684351..151686614-chr1:151735552..151738203,2	K562	blood:
3	chr1:151684278..151687580-chr1:151688035..151691948,5	MCF-7	breast:
4	chr1:151676777..151682969-chr1:151683840..151687385,6	K562	blood:
5	chr1:151685651..151688876-chr1:151692359..151694505,3	MCF-7	breast:
6	chr1:151681469..151683266-chr1:151683994..151686437,2	K562	blood:

Variant related genes	Relation type
ENSG00000143436	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000143450	Chromatin interaction
ENSG00000240510	Chromatin interaction
ENSG00000178796	Chromatin interaction
ENSG00000232937	Chromatin interaction

rs_ID	r²[population]
rs11808761	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1196462	0.87[EUR][1000 genomes]
rs1196466	0.89[EUR][1000 genomes]
rs1196468	0.87[EUR][1000 genomes]
rs12128050	0.87[EUR][1000 genomes]
rs12139264	0.81[AMR][1000 genomes]
rs12723676	0.89[EUR][1000 genomes]
rs61818467	0.83[EUR][1000 genomes]
rs6587615	0.83[AMR][1000 genomes]
rs6683687	0.81[AMR][1000 genomes]
rs6696250	0.81[AMR][1000 genomes]
rs878775	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs939592	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151667000-151687400	Weak transcription	K562	blood
2	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
3	chr1:151674200-151687400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:151674800-151686200	Weak transcription	Esophagus	oesophagus
5	chr1:151680200-151687400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:151680800-151686800	Enhancers	Fetal Brain Male	brain
7	chr1:151682000-151686400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:151683400-151687800	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
9	chr1:151683400-151688600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:151683600-151686400	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:151683800-151687000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:151684000-151687200	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
13	chr1:151684400-151686400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr1:151684400-151687200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:151684400-151687200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:151684400-151689600	Active TSS	Brain Anterior Caudate	brain
17	chr1:151684800-151686200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr1:151684800-151686200	Enhancers	Stomach Mucosa	stomach
19	chr1:151684800-151686400	Enhancers	HepG2	liver
20	chr1:151685200-151686200	Enhancers	Fetal Lung	lung
21	chr1:151685400-151686200	Enhancers	Brain Angular Gyrus	brain
22	chr1:151685400-151689800	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr1:151685400-151690000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:151685600-151686400	Enhancers	Colonic Mucosa	Colon
25	chr1:151685600-151686600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
26	chr1:151685600-151687000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:151685600-151690400	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr1:151685800-151686400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr1:151685800-151687000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:151685800-151687200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:151685800-151689400	Weak transcription	A549	lung
32	chr1:151686000-151686400	Enhancers	Brain Cingulate Gyrus	brain
33	chr1:151686000-151686600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr1:151686000-151686800	Enhancers	Fetal Intestine Large	intestine
35	chr1:151686000-151687000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr1:151686000-151687000	Genic enhancers	Fetal Intestine Small	intestine
37	chr1:151686000-151687000	Enhancers	NHEK	skin
38	chr1:151686000-151687200	Enhancers	HMEC	breast

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