Variant report

Variant	rs6683687
Chromosome Location	chr1:151692483-151692484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr1:151692377-151694954	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151685651..151688876-chr1:151692359..151694505,3	MCF-7	breast:
2	chr1:151674905..151676971-chr1:151691184..151693969,2	MCF-7	breast:

Variant related genes	Relation type
CELF3	TF binding region
RIIAD1	TF binding region
ENSG00000159409	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12139264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096402	0.81[EUR][1000 genomes]
rs41263702	0.81[AMR][1000 genomes]
rs6587615	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6587616	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6587617	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6696250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs878775	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs939592	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151689200-151692600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:151690000-151693200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:151690400-151692600	Weak transcription	Lung	lung
4	chr1:151690400-151693000	Weak transcription	Ovary	ovary
5	chr1:151690400-151693000	Weak transcription	Pancreas	Pancrea
6	chr1:151690600-151692800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:151690600-151693000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:151690800-151692800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:151691000-151692600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:151691000-151693400	Weak transcription	Fetal Brain Female	brain
11	chr1:151691000-151694200	Weak transcription	Spleen	Spleen
12	chr1:151691200-151692600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:151691200-151692600	Weak transcription	Right Atrium	heart
14	chr1:151691200-151692800	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:151691200-151692800	Weak transcription	Fetal Heart	heart
16	chr1:151691200-151693000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:151691400-151693000	Weak transcription	Brain Angular Gyrus	brain
18	chr1:151691400-151693200	Weak transcription	Fetal Brain Male	brain
19	chr1:151691600-151692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr1:151691600-151693000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:151691800-151692600	Weak transcription	Right Ventricle	heart
22	chr1:151692200-151693000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:151692200-151693000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr1:151692400-151692800	Enhancers	Stomach Smooth Muscle	stomach
25	chr1:151692400-151693400	Enhancers	Left Ventricle	heart

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