Variant report

Variant	rs2096402
Chromosome Location	chr1:151705137-151705138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151681341..151684483-chr1:151704346..151707206,3	MCF-7	breast:
2	chr1:151510750..151514940-chr1:151703475..151709245,7	MCF-7	breast:
3	chr1:151700879..151703254-chr1:151704820..151707408,3	MCF-7	breast:
4	chr1:151704913..151706629-chr1:151708145..151709858,2	K562	blood:
5	chr1:151688620..151691185-chr1:151704900..151706771,2	MCF-7	breast:
6	chr1:151512093..151515440-chr1:151705130..151708821,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232536	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000178796	Chromatin interaction
ENSG00000240510	Chromatin interaction
ENSG00000143367	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10218531	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10888429	0.80[EUR][1000 genomes]
rs10888431	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs10888432	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs10888433	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs10888434	0.80[EUR][1000 genomes]
rs11204879	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs11204880	0.85[CEU][hapmap]
rs11204882	0.80[EUR][1000 genomes]
rs11808761	0.81[CEU][hapmap]
rs1196350	0.81[CEU][hapmap]
rs12069106	0.87[EUR][1000 genomes]
rs12095851	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs12139264	0.82[EUR][1000 genomes]
rs12143606	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12758387	0.92[CEU][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4043740	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs4845339	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4845340	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4845542	0.94[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61815076	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6587615	0.96[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs6587616	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6587617	0.96[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6683687	0.81[EUR][1000 genomes]
rs6692364	0.84[CEU][hapmap]
rs6696250	0.96[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs7414314	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8480	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs878775	0.88[CEU][hapmap]
rs939592	0.88[CEU][hapmap];0.87[JPT][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151700800-151709800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:151701600-151707400	Weak transcription	Brain Anterior Caudate	brain
3	chr1:151702000-151707400	Weak transcription	Brain Angular Gyrus	brain
4	chr1:151702200-151709800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:151702600-151709600	Weak transcription	Right Atrium	heart
6	chr1:151702800-151707200	Weak transcription	Liver	Liver
7	chr1:151702800-151707400	Weak transcription	Pancreas	Pancrea
8	chr1:151702800-151707600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:151702800-151712200	Weak transcription	Stomach Mucosa	stomach
10	chr1:151703000-151707400	Weak transcription	Fetal Intestine Small	intestine
11	chr1:151704400-151705600	Weak transcription	HepG2	liver

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