Variant report

Variant	rs10888429
Chromosome Location	chr1:151725345-151725346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151719068..151723308-chr1:151725326..151729049,4	K562	blood:
2	chr1:151725268..151728071-chr1:151729793..151731866,2	MCF-7	breast:
3	chr1:151711448..151713959-chr1:151724394..151726703,2	K562	blood:
4	chr1:151711863..151713959-chr1:151723622..151725894,2	K562	blood:

Variant related genes	Relation type
ENSG00000236940	Chromatin interaction
ENSG00000206980	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10218531	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888430	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.92[ASN][1000 genomes]
rs10888431	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888432	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888433	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888434	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204879	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11204880	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11204881	0.89[ASN][1000 genomes]
rs11204882	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12069106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12095851	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143606	0.92[EUR][1000 genomes]
rs12758387	0.91[EUR][1000 genomes]
rs2017850	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2096402	0.80[EUR][1000 genomes]
rs4043740	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4845339	0.91[EUR][1000 genomes]
rs4845340	0.91[EUR][1000 genomes]
rs4845542	0.99[EUR][1000 genomes]
rs61815076	0.94[EUR][1000 genomes]
rs6587617	0.84[EUR][1000 genomes]
rs6677429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6692364	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7414314	0.91[EUR][1000 genomes]
rs8480	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151712800-151729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:151712800-151731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:151721400-151727600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:151721400-151730600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:151722400-151729200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:151722800-151729200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:151723000-151728000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:151723000-151729200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:151723400-151726800	Weak transcription	Primary T cells from cord blood	blood
10	chr1:151723400-151729000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:151723400-151730000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:151723400-151730000	Weak transcription	HSMM	muscle
13	chr1:151723800-151729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:151723800-151730600	Weak transcription	Fetal Brain Male	brain
15	chr1:151724000-151729200	Weak transcription	Dnd41	blood
16	chr1:151724200-151727200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:151724400-151728200	Weak transcription	Liver	Liver
18	chr1:151724600-151727200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:151724800-151729200	Weak transcription	Fetal Stomach	stomach
20	chr1:151724800-151729600	Weak transcription	Brain Germinal Matrix	brain
21	chr1:151724800-151729800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:151725000-151727400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr1:151725000-151727800	Weak transcription	Fetal Muscle Leg	muscle
24	chr1:151725000-151728600	Weak transcription	Fetal Brain Female	brain
25	chr1:151725200-151728000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:151725200-151728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:151725200-151729400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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