Variant report

Variant	rs4845339
Chromosome Location	chr1:151710240-151710241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151709592..151712646-chr1:151734561..151736602,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143450	Chromatin interaction
ENSG00000143436	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10218531	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs1054475	0.81[CHB][hapmap]
rs10888429	0.91[EUR][1000 genomes]
rs10888431	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs10888432	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs10888433	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs10888434	0.90[EUR][1000 genomes]
rs11204879	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs11204880	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs11204882	0.90[EUR][1000 genomes]
rs1123855	0.88[CHB][hapmap]
rs11808761	0.80[CEU][hapmap]
rs1196350	0.80[CEU][hapmap]
rs1196462	0.80[CEU][hapmap]
rs12069106	0.97[EUR][1000 genomes]
rs12095851	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs12143606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12758387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1781421	0.88[CHB][hapmap]
rs1781423	0.88[CHB][hapmap]
rs1996729	0.83[CHB][hapmap]
rs2096402	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3828057	0.88[CHB][hapmap]
rs4043740	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4484926	0.83[CHB][hapmap]
rs4634911	0.81[CHB][hapmap]
rs4845340	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4845355	0.88[CHB][hapmap]
rs4845542	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61815076	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587615	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs6587616	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6587617	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs6672920	0.83[CHB][hapmap]
rs6677429	0.90[EUR][1000 genomes]
rs6684101	0.83[CHB][hapmap]
rs6692364	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs6696250	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs7414314	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8480	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs868866	0.88[CHB][hapmap]
rs868867	0.88[CHB][hapmap]
rs878775	0.84[CEU][hapmap]
rs939592	0.80[CEU][hapmap];0.87[JPT][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151702800-151712200	Weak transcription	Stomach Mucosa	stomach
2	chr1:151707800-151712200	Weak transcription	Pancreas	Pancrea
3	chr1:151708000-151711800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:151708400-151712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:151709400-151710600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:151709400-151710800	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr1:151709800-151710400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:151709800-151710400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:151709800-151710400	ZNF genes & repeats	Liver	Liver
10	chr1:151710200-151710400	ZNF genes & repeats	Aorta	Aorta
11	chr1:151710200-151712800	Enhancers	Skeletal Muscle Female	skeletal muscle

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