Variant report

Variant	rs1996729
Chromosome Location	chr1:151751081-151751082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151747278..151749965-chr1:151750344..151752531,2	K562	blood:
2	chr1:151744411..151746345-chr1:151749411..151752360,2	K562	blood:
3	chr1:151749151..151752129-chr1:151789791..151791884,2	MCF-7	breast:
4	chr1:151747278..151749965-chr1:151750344..151752531,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1054475	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586691	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs11806815	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12748967	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12756855	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12758387	0.85[CHB][hapmap]
rs1623480	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1781420	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1781421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1781423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1781424	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1915544	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1996731	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996732	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460997	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2495396	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35077383	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35834074	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3828057	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs4240870	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4484926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4845339	0.83[CHB][hapmap]
rs4845355	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4845556	0.98[EUR][1000 genomes]
rs4995159	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55982513	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60136317	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61815091	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61815098	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61815099	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587619	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6672920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6680404	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521817	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7523001	0.85[EUR][1000 genomes]
rs7529549	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs868866	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868867	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151736800-151762600	Weak transcription	Gastric	stomach
2	chr1:151737000-151752200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:151737000-151762400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:151737000-151762400	Weak transcription	HSMMtube	muscle
5	chr1:151737000-151762600	Weak transcription	Small Intestine	intestine
6	chr1:151737200-151753800	Weak transcription	A549	lung
7	chr1:151739400-151753200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:151740800-151759000	Weak transcription	Esophagus	oesophagus
9	chr1:151741000-151762600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:151741200-151753000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:151741200-151756200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:151742400-151755200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:151742800-151762600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:151744000-151762200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:151744600-151762200	Weak transcription	Primary B cells from cord blood	blood
16	chr1:151745200-151752600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:151745200-151752800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:151745400-151753200	Weak transcription	Fetal Kidney	kidney
19	chr1:151745400-151755600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr1:151745600-151754400	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr1:151745600-151755400	Strong transcription	Primary T cells from cord blood	blood
22	chr1:151745800-151752800	Strong transcription	Brain Substantia Nigra	brain
23	chr1:151745800-151754600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:151745800-151754600	Strong transcription	Brain Germinal Matrix	brain
25	chr1:151745800-151755000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:151745800-151755400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr1:151745800-151755600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr1:151745800-151755600	Strong transcription	Dnd41	blood
29	chr1:151746000-151752800	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr1:151746000-151754600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr1:151746000-151762400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:151746200-151751800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr1:151746200-151752000	Strong transcription	Fetal Thymus	thymus
34	chr1:151746200-151752000	Strong transcription	Thymus	Thymus
35	chr1:151746200-151752400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:151746200-151752600	Strong transcription	Adipose Nuclei	Adipose
37	chr1:151746200-151752600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr1:151746200-151752800	Strong transcription	Stomach Smooth Muscle	stomach
39	chr1:151746200-151753000	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr1:151746200-151754600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:151746200-151754600	Strong transcription	Brain Anterior Caudate	brain
42	chr1:151746200-151754800	Strong transcription	Brain Hippocampus Middle	brain
43	chr1:151746200-151755200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr1:151746200-151755600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:151746200-151755600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr1:151746400-151751600	Strong transcription	Brain Angular Gyrus	brain
47	chr1:151746400-151752600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:151746400-151753000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr1:151746400-151753400	Strong transcription	Brain Cingulate Gyrus	brain
50	chr1:151746400-151754400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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