Variant report

Variant	rs35077383
Chromosome Location	chr1:151754112-151754113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151747349..151749226-chr1:151752622..151754895,2	K562	blood:
2	chr1:151733431..151735514-chr1:151752760..151754528,2	K562	blood:
3	chr1:151751164..151754159-chr1:151759156..151761091,3	MCF-7	breast:
4	chr1:151725664..151728632-chr1:151752750..151754620,2	MCF-7	breast:
5	chr1:151747348..151750868-chr1:151751909..151754177,3	MCF-7	breast:
6	chr1:151747349..151750061-chr1:151752622..151754355,2	K562	blood:
7	chr1:151752426..151754254-chr1:151778758..151780979,2	K562	blood:
8	chr1:151752203..151754340-chr1:151755695..151758408,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000182134	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000269621	Chromatin interaction
ENSG00000143450	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1054475	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1123855	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11586691	0.93[EUR][1000 genomes]
rs11806815	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12748967	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12756855	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1623480	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1781420	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1781421	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1781423	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1781424	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1915544	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1996729	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1996731	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1996732	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2460997	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2495396	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35834074	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3828057	0.84[ASN][1000 genomes]
rs4240870	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4484926	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4634911	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4845355	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4845556	0.98[EUR][1000 genomes]
rs4995159	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55982513	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60136317	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61815091	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61815098	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61815099	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6587619	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6672920	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6680404	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6684101	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7521817	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7523001	0.85[EUR][1000 genomes]
rs7529549	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs868866	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs868867	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151736800-151762600	Weak transcription	Gastric	stomach
2	chr1:151737000-151762400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:151737000-151762400	Weak transcription	HSMMtube	muscle
4	chr1:151737000-151762600	Weak transcription	Small Intestine	intestine
5	chr1:151740800-151759000	Weak transcription	Esophagus	oesophagus
6	chr1:151741000-151762600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:151741200-151756200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr1:151742400-151755200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:151742800-151762600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:151744000-151762200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:151744600-151762200	Weak transcription	Primary B cells from cord blood	blood
12	chr1:151745400-151755600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:151745600-151754400	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr1:151745600-151755400	Strong transcription	Primary T cells from cord blood	blood
15	chr1:151745800-151754600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:151745800-151754600	Strong transcription	Brain Germinal Matrix	brain
17	chr1:151745800-151755000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:151745800-151755400	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr1:151745800-151755600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr1:151745800-151755600	Strong transcription	Dnd41	blood
21	chr1:151746000-151754600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:151746000-151762400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:151746200-151754600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:151746200-151754600	Strong transcription	Brain Anterior Caudate	brain
25	chr1:151746200-151754800	Strong transcription	Brain Hippocampus Middle	brain
26	chr1:151746200-151755200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:151746200-151755600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:151746200-151755600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr1:151746400-151754400	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr1:151746400-151754600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr1:151746800-151762000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:151747000-151762400	Weak transcription	Psoas Muscle	Psoas
33	chr1:151747000-151762400	Weak transcription	Right Ventricle	heart
34	chr1:151747200-151759600	Weak transcription	HMEC	breast
35	chr1:151747200-151762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:151747600-151762400	Weak transcription	Pancreas	Pancrea
37	chr1:151748400-151761400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr1:151748400-151762200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr1:151748600-151762400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr1:151748800-151754400	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr1:151748800-151761800	Weak transcription	HepG2	liver
42	chr1:151748800-151762400	Weak transcription	Colonic Mucosa	Colon
43	chr1:151749000-151758800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr1:151749200-151755200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:151749200-151755800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr1:151749200-151762600	Weak transcription	Spleen	Spleen
47	chr1:151749400-151756400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr1:151749400-151762400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr1:151749600-151762000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr1:151749600-151762200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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