Variant report

Variant	rs2495396
Chromosome Location	chr1:151744928-151744929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151734673..151739235-chr1:151743434..151748412,7	K562	blood:
2	chr1:151744411..151746345-chr1:151749411..151752360,2	K562	blood:
3	chr1:151744403..151747362-chr3:64316388..64318977,2	MCF-7	breast:
4	chr1:151743016..151748388-chr1:151755339..151760990,6	MCF-7	breast:
5	chr1:151738951..151741129-chr1:151742913..151745128,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143436	Chromatin interaction
ENSG00000268288	Chromatin interaction
ENSG00000143450	Chromatin interaction
ENSG00000232937	Chromatin interaction
ENSG00000182134	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1054475	0.92[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123855	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586691	0.85[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs11806815	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12748967	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12756855	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1623480	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1781420	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1781421	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1781423	0.92[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1781424	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1915544	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1996729	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996731	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996732	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460997	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35077383	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35834074	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3828057	0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs4240870	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4484926	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634911	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4845355	0.89[CEU][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4845556	0.99[EUR][1000 genomes]
rs4995159	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55982513	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60136317	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61815091	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61815098	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61815099	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6587619	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6672920	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6680404	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6684101	0.92[ASW][hapmap];1.00[CEU][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521817	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7523001	0.84[EUR][1000 genomes]
rs7529549	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs868866	0.89[CEU][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868867	0.89[CEU][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2495396	TDRKH	cis	multi-tissue	Pritchard

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151736600-151746200	Weak transcription	Thymus	Thymus
2	chr1:151736600-151746600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:151736600-151751000	Weak transcription	Ovary	ovary
4	chr1:151736800-151745400	Weak transcription	Fetal Brain Female	brain
5	chr1:151736800-151745800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:151736800-151745800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:151736800-151745800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:151736800-151746000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:151736800-151746000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:151736800-151746200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:151736800-151746200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr1:151736800-151746200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr1:151736800-151746200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr1:151736800-151746200	Weak transcription	Brain Anterior Caudate	brain
15	chr1:151736800-151746200	Weak transcription	Fetal Thymus	thymus
16	chr1:151736800-151746400	Weak transcription	Aorta	Aorta
17	chr1:151736800-151746400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:151736800-151746400	Weak transcription	Right Ventricle	heart
19	chr1:151736800-151746600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:151736800-151746600	Weak transcription	Psoas Muscle	Psoas
21	chr1:151736800-151746800	Weak transcription	Left Ventricle	heart
22	chr1:151736800-151746800	Weak transcription	Spleen	Spleen
23	chr1:151736800-151747200	Weak transcription	Fetal Brain Male	brain
24	chr1:151736800-151747400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:151736800-151747800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:151736800-151748000	Weak transcription	Colonic Mucosa	Colon
27	chr1:151736800-151750800	Weak transcription	Right Atrium	heart
28	chr1:151736800-151762600	Weak transcription	Gastric	stomach
29	chr1:151737000-151745200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:151737000-151745400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr1:151737000-151745600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr1:151737000-151745800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr1:151737000-151745800	Weak transcription	Liver	Liver
34	chr1:151737000-151745800	Weak transcription	Brain Germinal Matrix	brain
35	chr1:151737000-151745800	Weak transcription	Brain Substantia Nigra	brain
36	chr1:151737000-151746000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:151737000-151746000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr1:151737000-151746200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr1:151737000-151746200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:151737000-151746400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr1:151737000-151746400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:151737000-151746400	Weak transcription	Brain Angular Gyrus	brain
43	chr1:151737000-151746400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr1:151737000-151746400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr1:151737000-151746400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr1:151737000-151746400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr1:151737000-151746400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:151737000-151746400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:151737000-151746600	Weak transcription	Fetal Muscle Leg	muscle
50	chr1:151737000-151747400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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