Variant report

Variant	rs6587617
Chromosome Location	chr1:151703992-151703993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151510750..151514940-chr1:151703475..151709245,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143367	Chromatin interaction
ENSG00000232536	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10218531	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs10888429	0.84[EUR][1000 genomes]
rs10888431	0.85[CEU][hapmap]
rs10888432	0.85[CEU][hapmap]
rs10888433	0.85[CEU][hapmap]
rs10888434	0.83[EUR][1000 genomes]
rs11204879	0.89[CEU][hapmap]
rs11204880	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs11204882	0.83[EUR][1000 genomes]
rs11808761	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs1196350	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs1196462	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs1196466	0.83[CHB][hapmap]
rs12095851	0.85[CEU][hapmap]
rs12122920	0.83[CHB][hapmap]
rs12139264	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12143606	0.92[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes]
rs12758387	0.92[CEU][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes]
rs2096402	0.96[CEU][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4043740	0.87[CEU][hapmap]
rs4845339	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs4845340	0.91[AMR][1000 genomes]
rs4845542	0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61815076	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6587615	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6587616	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6677429	0.83[EUR][1000 genomes]
rs6683687	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6692364	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs6696250	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7414314	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8480	0.85[CEU][hapmap]
rs878775	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs939592	0.89[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151700800-151704000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:151700800-151709800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:151701600-151707400	Weak transcription	Brain Anterior Caudate	brain
4	chr1:151702000-151707400	Weak transcription	Brain Angular Gyrus	brain
5	chr1:151702200-151709800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:151702600-151709600	Weak transcription	Right Atrium	heart
7	chr1:151702800-151707200	Weak transcription	Liver	Liver
8	chr1:151702800-151707400	Weak transcription	Pancreas	Pancrea
9	chr1:151702800-151707600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:151702800-151712200	Weak transcription	Stomach Mucosa	stomach
11	chr1:151703000-151704000	Weak transcription	HepG2	liver
12	chr1:151703000-151707400	Weak transcription	Fetal Intestine Small	intestine

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