Variant report

Variant	rs12143606
Chromosome Location	chr1:151724279-151724280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151721010..151724509-chr1:151727967..151731258,3	MCF-7	breast:
2	chr1:151711863..151713959-chr1:151723622..151725894,2	K562	blood:

Variant related genes	Relation type
ENSG00000269621	Chromatin interaction
ENSG00000236940	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10218531	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10888429	0.92[EUR][1000 genomes]
rs10888431	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs10888432	0.91[CEU][hapmap];0.98[EUR][1000 genomes]
rs10888433	0.91[CEU][hapmap];0.98[EUR][1000 genomes]
rs10888434	0.92[EUR][1000 genomes]
rs11204879	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs11204880	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs11204882	0.92[EUR][1000 genomes]
rs1123855	0.83[CHB][hapmap]
rs12069106	0.99[EUR][1000 genomes]
rs12095851	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs12758387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1781421	0.83[CHB][hapmap]
rs1781423	0.83[CHB][hapmap]
rs2096402	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3828057	0.83[CHB][hapmap]
rs4043740	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4845339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4845340	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4845355	0.83[CHB][hapmap]
rs4845542	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61815076	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6587615	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs6587616	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6587617	0.92[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes]
rs6677429	0.91[EUR][1000 genomes]
rs6692364	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs6696250	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs7414314	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8480	0.91[CEU][hapmap];0.98[EUR][1000 genomes]
rs868866	0.83[CHB][hapmap]
rs868867	0.83[CHB][hapmap]
rs878775	0.83[CEU][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151712800-151729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:151712800-151731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:151721400-151727600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:151721400-151730600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:151722400-151729200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:151722800-151729200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:151723000-151728000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:151723000-151729200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:151723400-151726800	Weak transcription	Primary T cells from cord blood	blood
10	chr1:151723400-151729000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:151723400-151730000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:151723400-151730000	Weak transcription	HSMM	muscle
13	chr1:151723800-151729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:151723800-151730600	Weak transcription	Fetal Brain Male	brain
15	chr1:151724000-151729200	Weak transcription	Dnd41	blood
16	chr1:151724200-151727200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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