Variant report

Variant	rs10888434
Chromosome Location	chr1:151732915-151732916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151732101..151733764-chr1:151763147..151765011,2	MCF-7	breast:
2	chr1:150944160..150945692-chr1:151732521..151735210,2	K562	blood:
3	chr1:151731280..151733318-chr21:46417317..46419961,2	MCF-7	breast:
4	chr1:151731676..151737592-chr1:151803957..151806544,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143418	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000143365	Chromatin interaction
ENSG00000182134	Chromatin interaction
ENSG00000231073	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10218531	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888429	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888430	0.87[ASN][1000 genomes]
rs10888431	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888432	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204879	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204880	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204881	0.86[ASN][1000 genomes]
rs11204882	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12069106	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12095851	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12143606	0.92[EUR][1000 genomes]
rs12758387	0.90[EUR][1000 genomes]
rs2017850	0.85[ASN][1000 genomes]
rs2096402	0.80[EUR][1000 genomes]
rs4043740	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4845339	0.90[EUR][1000 genomes]
rs4845340	0.91[EUR][1000 genomes]
rs4845542	0.98[EUR][1000 genomes]
rs61815076	0.94[EUR][1000 genomes]
rs6587617	0.83[EUR][1000 genomes]
rs6677429	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6692364	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7414314	0.91[EUR][1000 genomes]
rs8480	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151726800-151734800	Strong transcription	Primary T cells from cord blood	blood
2	chr1:151727200-151734600	Strong transcription	Stomach Smooth Muscle	stomach
3	chr1:151727400-151734600	Strong transcription	Brain Anterior Caudate	brain
4	chr1:151727400-151734800	Strong transcription	Fetal Muscle Trunk	muscle
5	chr1:151727400-151735400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:151727600-151734600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:151727600-151734600	Strong transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:151727600-151734600	Strong transcription	Thymus	Thymus
9	chr1:151727600-151735000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:151727600-151735200	Weak transcription	Right Ventricle	heart
11	chr1:151727800-151734800	Strong transcription	Fetal Muscle Leg	muscle
12	chr1:151728000-151733800	Weak transcription	Psoas Muscle	Psoas
13	chr1:151728000-151734600	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:151728000-151734800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:151728200-151734800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:151728200-151734800	Strong transcription	Liver	Liver
17	chr1:151728400-151733200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:151728600-151734600	Strong transcription	Fetal Brain Female	brain
19	chr1:151729000-151733000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:151729000-151734600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:151729000-151734600	Strong transcription	Adipose Nuclei	Adipose
22	chr1:151729200-151733600	Strong transcription	Dnd41	blood
23	chr1:151729200-151734600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:151729200-151734600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:151729200-151734600	Strong transcription	Brain Inferior Temporal Lobe	brain
26	chr1:151729200-151734600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:151729200-151734600	Strong transcription	Fetal Stomach	stomach
28	chr1:151729200-151734800	Strong transcription	Primary B cells from peripheral blood	blood
29	chr1:151729200-151734800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr1:151729200-151735000	Weak transcription	NHDF-Ad	bronchial
31	chr1:151729400-151734600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr1:151729400-151734600	Strong transcription	Spleen	Spleen
33	chr1:151729400-151734800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:151729400-151734800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr1:151729400-151734800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:151729400-151734800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr1:151729400-151735000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr1:151729400-151735000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr1:151729400-151735200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:151729400-151735200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr1:151729600-151734000	Strong transcription	Fetal Thymus	thymus
42	chr1:151729600-151734400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr1:151729600-151734600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:151729600-151734600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:151729600-151734600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:151729600-151734600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:151729600-151734600	Strong transcription	Brain Germinal Matrix	brain
48	chr1:151729600-151734600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr1:151729600-151734600	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr1:151729600-151734800	Strong transcription	Primary T cells fromperipheralblood	blood

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