Variant report

Variant	rs2017850
Chromosome Location	chr1:151715279-151715280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000143436	Chromatin interaction
ENSG00000206980	Chromatin interaction
ENSG00000269621	Chromatin interaction
ENSG00000236940	Chromatin interaction
ENSG00000232937	Chromatin interaction
ENSG00000143450	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10218531	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10888429	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10888430	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10888431	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10888432	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10888433	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10888434	0.85[ASN][1000 genomes]
rs11204879	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11204880	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11204881	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11204882	0.86[ASN][1000 genomes]
rs12069106	0.90[ASN][1000 genomes]
rs12095851	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4043740	0.90[ASN][1000 genomes]
rs6677429	0.89[ASN][1000 genomes]
rs6692364	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8480	0.83[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2017850	SPRR1B	cis	cerebellum	SCAN
rs2017850	C1orf54	cis	cerebellum	SCAN
rs2017850	SPRR2B	cis	cerebellum	SCAN
rs2017850	GOLPH3L	cis	parietal	SCAN
rs2017850	MTMR11	cis	cerebellum	SCAN
rs2017850	GATAD2B	cis	cerebellum	SCAN
rs2017850	TDRKH	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151712800-151715600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:151712800-151729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:151712800-151731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:151714200-151715600	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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