Variant report

Variant	rs4043740
Chromosome Location	chr1:151713014-151713015
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151711443..151713747-chr1:151762269..151764289,2	MCF-7	breast:
2	chr1:151677618..151679367-chr1:151711033..151713298,2	MCF-7	breast:
3	chr1:151710281..151715545-chr1:151734396..151738470,5	MCF-7	breast:
4	chr1:151680015..151682391-chr1:151711157..151713742,2	MCF-7	breast:
5	chr1:151711448..151713959-chr1:151724394..151726703,2	K562	blood:
6	chr1:151712387..151713103-chr1:151762609..151763358,3	MCF-7	breast:
7	chr1:151711863..151713959-chr1:151723622..151725894,2	K562	blood:
8	chr1:151712042..151713073-chr1:151808628..151809658,5	MCF-7	breast:
9	chr1:151712112..151713087-chr1:151808881..151809397,2	MCF-7	breast:
10	chr1:151511666..151514194-chr1:151711299..151714141,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000143450	Chromatin interaction
ENSG00000182134	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000232937	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000232536	Chromatin interaction
ENSG00000143367	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10218531	0.95[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888429	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888430	0.90[ASN][1000 genomes]
rs10888431	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888432	0.95[CEU][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888433	0.95[CEU][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888434	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204879	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11204880	0.95[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11204881	0.89[ASN][1000 genomes]
rs11204882	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11808761	0.81[CEU][hapmap]
rs1196350	0.81[CEU][hapmap]
rs12069106	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12095851	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12143606	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12758387	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2017850	0.90[ASN][1000 genomes]
rs2096402	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs4845339	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4845340	0.99[EUR][1000 genomes]
rs4845542	0.91[EUR][1000 genomes]
rs61815076	0.89[EUR][1000 genomes]
rs6587615	0.86[CEU][hapmap]
rs6587616	0.85[EUR][1000 genomes]
rs6587617	0.87[CEU][hapmap]
rs6677429	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6692364	0.95[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6696250	0.86[CEU][hapmap]
rs7414314	0.86[EUR][1000 genomes]
rs8480	0.95[CEU][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs939592	0.81[CEU][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151711800-151713600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:151712000-151713200	Enhancers	Placenta	Placenta
3	chr1:151712200-151713400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:151712400-151713200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr1:151712800-151715600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:151712800-151729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:151712800-151731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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