Variant report

Variant	rs6677429
Chromosome Location	chr1:151729930-151729931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:151729586-151730112	K562	blood:	n/a	n/a
2	POLR2A	chr1:151729177-151730192	K562	blood:	n/a	n/a
3	POLR2A	chr1:151729823-151730132	K562	blood:	n/a	n/a
4	POLR2A	chr1:151729874-151730048	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr1:151729744-151730273	K562	blood:	n/a	n/a
6	POLR2A	chr1:151728721-151730001	MCF10A-Er-Src	breast:	n/a	n/a
7	POLR2A	chr1:151729169-151730073	GM12878	blood:	n/a	n/a
8	POLR2A	chr1:151729348-151730085	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr1:151729680-151730092	HepG2	liver:	n/a	n/a
10	POLR2A	chr1:151729130-151730092	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151262059..151264776-chr1:151727556..151730221,2	K562	blood:
2	chr1:151725268..151728071-chr1:151729793..151731866,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236940	TF binding region
ENSG00000143373	Chromatin interaction
ENSG00000269621	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10218531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888430	0.91[ASN][1000 genomes]
rs10888431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888432	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888433	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888434	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11204879	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11204880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11204881	0.90[ASN][1000 genomes]
rs11204882	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12069106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12095851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12143606	0.91[EUR][1000 genomes]
rs12758387	0.91[EUR][1000 genomes]
rs2017850	0.89[ASN][1000 genomes]
rs4043740	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4845339	0.90[EUR][1000 genomes]
rs4845340	0.90[EUR][1000 genomes]
rs4845542	0.98[EUR][1000 genomes]
rs61815076	0.93[EUR][1000 genomes]
rs6587617	0.83[EUR][1000 genomes]
rs6692364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7414314	0.90[EUR][1000 genomes]
rs8480	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151712800-151731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:151721400-151730600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:151723400-151730000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:151723400-151730000	Weak transcription	HSMM	muscle
5	chr1:151723800-151730600	Weak transcription	Fetal Brain Male	brain
6	chr1:151725600-151730000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:151725600-151730600	Weak transcription	HSMMtube	muscle
8	chr1:151725800-151730000	Weak transcription	A549	lung
9	chr1:151725800-151730600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:151726000-151730400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:151726000-151730600	Weak transcription	Pancreas	Pancrea
12	chr1:151726200-151730600	Weak transcription	Primary B cells from cord blood	blood
13	chr1:151726200-151730600	Weak transcription	Esophagus	oesophagus
14	chr1:151726200-151731600	Weak transcription	Lung	lung
15	chr1:151726200-151731800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:151726400-151730600	Weak transcription	NH-A	brain
17	chr1:151726600-151730600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:151726800-151734800	Strong transcription	Primary T cells from cord blood	blood
19	chr1:151727000-151730000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:151727000-151730000	Weak transcription	Fetal Intestine Large	intestine
21	chr1:151727000-151730600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr1:151727200-151734600	Strong transcription	Stomach Smooth Muscle	stomach
23	chr1:151727400-151734600	Strong transcription	Brain Anterior Caudate	brain
24	chr1:151727400-151734800	Strong transcription	Fetal Muscle Trunk	muscle
25	chr1:151727400-151735400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr1:151727600-151734600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:151727600-151734600	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:151727600-151734600	Strong transcription	Thymus	Thymus
29	chr1:151727600-151735000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:151727600-151735200	Weak transcription	Right Ventricle	heart
31	chr1:151727800-151730600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:151727800-151730600	Weak transcription	Fetal Heart	heart
33	chr1:151727800-151731800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr1:151727800-151734800	Strong transcription	Fetal Muscle Leg	muscle
35	chr1:151728000-151730600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:151728000-151730600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:151728000-151730600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr1:151728000-151730800	Weak transcription	HepG2	liver
39	chr1:151728000-151733800	Weak transcription	Psoas Muscle	Psoas
40	chr1:151728000-151734600	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr1:151728000-151734800	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:151728200-151730200	Weak transcription	Fetal Lung	lung
43	chr1:151728200-151730400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr1:151728200-151730400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr1:151728200-151730600	Weak transcription	Placenta	Placenta
46	chr1:151728200-151734800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr1:151728200-151734800	Strong transcription	Liver	Liver
48	chr1:151728400-151730600	Weak transcription	Brain Angular Gyrus	brain
49	chr1:151728400-151730600	Weak transcription	Ovary	ovary
50	chr1:151728400-151730800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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