Variant report
| Variant | rs12727124 |
|---|---|
| Chromosome Location | chr1:165905436-165905437 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:165904289..165907222-chr1:165909340..165911329,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271527 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10800169 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10800170 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10800171 | 0.95[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10800172 | 0.95[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10918313 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10918314 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11577887 | 1.00[EUR][1000 genomes] |
| rs12730991 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1663838 | 0.84[ASN][1000 genomes] |
| rs1663839 | 0.84[ASN][1000 genomes] |
| rs2349104 | 1.00[ASN][1000 genomes] |
| rs34075422 | 1.00[EUR][1000 genomes] |
| rs7512913 | 0.94[ASN][1000 genomes] |
| rs7513150 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872509 | chr1:165885147-165917109 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv520206 | chr1:165903962-165913774 | Weak transcription Enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3417869 | chr1:165905425-165905635 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:165904400-165912000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
