Variant report

Variant	rs2349104
Chromosome Location	chr1:165908152-165908153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10800169	1.00[ASN][1000 genomes]
rs10800170	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800171	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800172	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10918313	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10918314	1.00[ASN][1000 genomes]
rs10918315	0.82[EUR][1000 genomes]
rs11577887	0.86[AFR][1000 genomes]
rs12120390	0.99[EUR][1000 genomes]
rs12124634	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12727124	1.00[ASN][1000 genomes]
rs12730991	1.00[ASN][1000 genomes]
rs1663838	0.84[ASN][1000 genomes]
rs1663839	0.84[ASN][1000 genomes]
rs34075422	0.86[AFR][1000 genomes]
rs7512913	0.94[ASN][1000 genomes]
rs7513150	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv520206	chr1:165903962-165913774	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165904400-165912000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:165906800-165910600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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