Variant report
Variant | rs12727514 |
---|---|
Chromosome Location | chr1:76825125-76825126 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12734622 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12737993 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12740580 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs12752451 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12753434 | 1.00[EUR][1000 genomes] |
rs12755056 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs12756101 | 1.00[EUR][1000 genomes] |
rs17098145 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17098842 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17098859 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs34926311 | 0.96[EUR][1000 genomes] |
rs35036475 | 0.96[EUR][1000 genomes] |
rs35300379 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs4288644 | 0.91[YRI][hapmap] |
rs61771498 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs61771500 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs61771514 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs61771515 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs61771516 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs71656883 | 0.96[EUR][1000 genomes] |
rs942699 | 0.90[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv870621 | chr1:76620313-76997071 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv534168 | chr1:76718950-77039352 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv1006776 | chr1:76777323-76899975 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1014231 | chr1:76781140-76880630 | Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:76817800-76829400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr1:76817800-76832200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |