Variant report

Variant	rs71656883
Chromosome Location	chr1:76805664-76805665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12727514	0.96[EUR][1000 genomes]
rs12734622	0.96[EUR][1000 genomes]
rs12737993	0.90[EUR][1000 genomes]
rs12740580	0.93[EUR][1000 genomes]
rs12752451	0.83[EUR][1000 genomes]
rs12753434	0.96[EUR][1000 genomes]
rs12755056	0.93[EUR][1000 genomes]
rs12756101	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17098145	0.93[EUR][1000 genomes]
rs17098842	0.93[EUR][1000 genomes]
rs17098859	0.93[EUR][1000 genomes]
rs34926311	0.93[EUR][1000 genomes]
rs35036475	0.93[EUR][1000 genomes]
rs35300379	1.00[EUR][1000 genomes]
rs61771498	0.93[EUR][1000 genomes]
rs61771500	0.93[EUR][1000 genomes]
rs61771514	0.93[EUR][1000 genomes]
rs61771515	0.93[EUR][1000 genomes]
rs61771516	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014231	chr1:76781140-76880630	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76780200-76813800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76780600-76817200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76803600-76806000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:76803600-76817400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:76803600-76817400	Weak transcription	Brain Anterior Caudate	brain
6	chr1:76803800-76805800	Weak transcription	Adipose Nuclei	Adipose
7	chr1:76803800-76805800	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:76803800-76817600	Weak transcription	Brain Substantia Nigra	brain
9	chr1:76804000-76809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:76804400-76808600	Weak transcription	Fetal Heart	heart
11	chr1:76805200-76805800	Enhancers	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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