Variant report

Variant	rs35300379
Chromosome Location	chr1:76807131-76807132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12727514	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12734622	0.96[EUR][1000 genomes]
rs12737993	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12740580	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12752451	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12753434	0.96[EUR][1000 genomes]
rs12755056	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12756101	0.96[EUR][1000 genomes]
rs17098145	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17098842	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17098859	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34926311	0.93[EUR][1000 genomes]
rs35036475	0.93[EUR][1000 genomes]
rs61771498	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61771500	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61771514	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61771515	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61771516	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71656883	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014231	chr1:76781140-76880630	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76780200-76813800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76780600-76817200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76803600-76817400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:76803600-76817400	Weak transcription	Brain Anterior Caudate	brain
5	chr1:76803800-76817600	Weak transcription	Brain Substantia Nigra	brain
6	chr1:76804000-76809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:76804400-76808600	Weak transcription	Fetal Heart	heart
8	chr1:76805800-76808800	Weak transcription	Primary T cells from cord blood	blood
9	chr1:76806200-76813800	Weak transcription	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links