Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10864448	0.85[AMR][1000 genomes]
rs10864449	0.81[EUR][1000 genomes]
rs11580854	0.80[EUR][1000 genomes]
rs12116966	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12117765	0.80[EUR][1000 genomes]
rs12740371	0.86[ASN][1000 genomes]
rs12757820	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1538557	0.81[EUR][1000 genomes]
rs2105212	0.84[EUR][1000 genomes]
rs34565762	0.81[EUR][1000 genomes]
rs35257796	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3828081	0.87[ASN][1000 genomes]
rs3903151	0.87[ASN][1000 genomes]
rs4348727	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4846197	0.83[EUR][1000 genomes]
rs61775872	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61775874	0.80[AMR][1000 genomes]
rs61775885	0.84[EUR][1000 genomes]
rs61775887	0.83[EUR][1000 genomes]
rs61784570	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6660928	0.84[ASN][1000 genomes]
rs6670208	0.84[ASN][1000 genomes]
rs6670320	0.84[ASN][1000 genomes]
rs6675036	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10250000-10269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:10262000-10269400	Weak transcription	Fetal Brain Male	brain
3	chr1:10264000-10268200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr1:10264600-10267600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:10264600-10267600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:10264600-10268000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:10264600-10268200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:10264600-10269400	Weak transcription	HSMMtube	muscle
9	chr1:10264800-10269000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:10265200-10268200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:10265400-10269400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:10265400-10269400	Weak transcription	HepG2	liver
13	chr1:10265400-10269600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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