Variant report

Variant	rs3903151
Chromosome Location	chr1:10260592-10260593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1002076	0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs10492969	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs10492971	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10492972	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs10492973	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10864448	0.81[ASN][1000 genomes]
rs10864450	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10864453	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11121526	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11121551	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs11121552	0.85[CHD][hapmap]
rs11121555	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11121557	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs11582123	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11585794	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11587309	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs11587495	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12116966	0.99[ASN][1000 genomes]
rs12120042	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs12120191	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs12127604	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12130220	0.85[CHD][hapmap]
rs12130563	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12131441	0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs12133617	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12136376	0.85[CHD][hapmap]
rs12141246	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12141416	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs12403443	0.85[CHD][hapmap]
rs12407992	0.85[CHD][hapmap]
rs12409754	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs12728071	0.87[ASN][1000 genomes]
rs12734551	0.85[CHD][hapmap]
rs12737239	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12740371	0.98[ASN][1000 genomes]
rs12757288	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1339458	0.85[CHD][hapmap]
rs1467653	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs1536262	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs1538557	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs1555849	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs1556915	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs1556916	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs1556917	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs17034643	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs17034821	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs17400510	0.85[CHD][hapmap]
rs17401924	0.85[CHD][hapmap]
rs17401966	0.85[CHD][hapmap]
rs17410217	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs17411502	0.85[CHD][hapmap]
rs1974293	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2027327	0.81[ASN][1000 genomes]
rs2027330	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2039778	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2182326	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs2185252	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs2275424	0.83[CHD][hapmap]
rs35257796	0.98[ASN][1000 genomes]
rs3737155	0.85[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs3748575	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs3748576	0.83[MKK][hapmap]
rs3748577	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs3748578	0.85[CHD][hapmap]
rs3748581	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs3753037	0.85[CHD][hapmap]
rs3828081	0.97[ASN][1000 genomes]
rs4240911	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4333852	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4348727	0.83[CHD][hapmap]
rs4475756	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4529713	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4623	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4845930	0.84[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs4846197	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4846198	0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs4846199	0.84[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4846207	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4846208	0.85[CHD][hapmap]
rs4846209	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4846210	0.85[CHD][hapmap]
rs4846212	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs4846216	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs61775872	0.81[ASN][1000 genomes]
rs61784570	0.99[ASN][1000 genomes]
rs6541080	0.80[CEU][hapmap]
rs6541085	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs6541089	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6660928	0.95[ASN][1000 genomes]
rs6661326	0.96[CEU][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap]
rs6670208	0.95[ASN][1000 genomes]
rs6670320	0.95[ASN][1000 genomes]
rs6674843	0.85[CHD][hapmap]
rs6675036	0.95[ASN][1000 genomes]
rs6682868	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs6696056	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7418410	0.96[CEU][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs746881	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs7520935	0.85[CHD][hapmap]
rs7546364	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7546368	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs7553228	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7553935	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs8019	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs912962	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]
rs912963	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs9332414	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs946501	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs946503	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap]
rs946504	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10250000-10261000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:10250000-10269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:10257400-10264200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:10257600-10261200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:10260200-10260600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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