The 2.0 version of rSNPBase

Variant report

Variant rs12141246
Chromosome Location chr1:10327407-10327408
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10272600-10368200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:10307600-10340400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:10311000-10327600 Weak transcription Aorta Aorta
4 chr1:10311600-10331200 Weak transcription Fetal Thymus thymus
5 chr1:10312600-10327600 Weak transcription HMEC breast
6 chr1:10312800-10347200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr1:10313800-10327600 Weak transcription Right Atrium heart
8 chr1:10314000-10331800 Weak transcription K562 blood
9 chr1:10314200-10356400 Weak transcription Small Intestine intestine
10 chr1:10314200-10363400 Weak transcription Fetal Brain Male brain
11 chr1:10314600-10332200 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:10314800-10347000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:10315000-10355600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:10315400-10327600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr1:10315400-10373400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:10316400-10337600 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr1:10316800-10380200 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr1:10317400-10337600 Weak transcription Primary T helper cells PMA-I stimulated --
19 chr1:10317400-10337600 Weak transcription GM12878-XiMat blood
20 chr1:10317400-10355200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
21 chr1:10317400-10356400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:10317600-10355600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr1:10318000-10334000 Strong transcription Fetal Muscle Trunk muscle
24 chr1:10318400-10367600 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr1:10318800-10329400 Strong transcription Adipose Nuclei Adipose
26 chr1:10318800-10334000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr1:10318800-10334600 Strong transcription Fetal Muscle Leg muscle
28 chr1:10319200-10338000 Weak transcription Primary B cells from cord blood blood
29 chr1:10319400-10329800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:10320400-10331400 Weak transcription Fetal Intestine Small intestine
31 chr1:10320400-10331400 Weak transcription Dnd41 blood
32 chr1:10320600-10363000 Weak transcription Gastric stomach
33 chr1:10321000-10332000 Strong transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:10321400-10333600 Strong transcription HUES64 Cell Line embryonic stem cell
35 chr1:10321400-10359000 Strong transcription Monocytes-CD14+_RO01746 blood
36 chr1:10321600-10328200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr1:10321600-10340600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:10321800-10329400 Strong transcription HUES6 Cell Line embryonic stem cell
39 chr1:10321800-10353200 Strong transcription Breast Myoepithelial Primary Cells Breast
40 chr1:10322000-10328800 Strong transcription Brain Germinal Matrix brain
41 chr1:10322000-10340600 Strong transcription HSMM muscle
42 chr1:10322200-10337400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr1:10322400-10335800 Weak transcription Pancreas Pancrea
44 chr1:10322400-10337600 Weak transcription Hela-S3 cervix
45 chr1:10322400-10343400 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr1:10322400-10356400 Weak transcription Esophagus oesophagus
47 chr1:10322600-10331800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr1:10322600-10331800 Weak transcription HepG2 liver
49 chr1:10322600-10332600 Weak transcription Fetal Brain Female brain
50 chr1:10322600-10337600 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015