Variant report

Variant	rs12131441
Chromosome Location	chr1:10428952-10428953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10428901..10433692-chr1:10435173..10439576,7	K562	blood:

Extended variants
information (count: 212 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:207)

rs_ID	r²[population]
rs1002076	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1013952	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1013953	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10492969	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10492971	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10492972	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10492973	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1049887	0.85[EUR][1000 genomes]
rs1065828	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10864448	0.82[EUR][1000 genomes]
rs10864449	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10864450	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10864453	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11121535	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11121537	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11121539	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11121541	0.83[ASN][1000 genomes]
rs11121544	0.85[EUR][1000 genomes]
rs11121545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11121551	0.93[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11121552	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs11121555	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11121557	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11121560	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11121561	0.81[ASN][1000 genomes]
rs11121563	0.80[ASN][1000 genomes]
rs11121566	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs1138791	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11576384	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11576459	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11576654	0.84[EUR][1000 genomes]
rs11576866	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs11578694	0.83[EUR][1000 genomes]
rs11578788	0.88[EUR][1000 genomes]
rs11579365	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[ASN][1000 genomes]
rs11580789	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11580854	0.82[EUR][1000 genomes]
rs11582123	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11584023	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11585760	0.88[EUR][1000 genomes]
rs11585794	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11586842	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11587309	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11587495	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11587854	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12117635	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12118323	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12119477	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12120042	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12120191	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12122029	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12125535	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12127604	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12128374	0.97[ASN][1000 genomes]
rs12130220	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12130563	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132134	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12132635	0.89[EUR][1000 genomes]
rs12133617	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12136376	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap]
rs12137456	0.81[EUR][1000 genomes]
rs12137880	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12139981	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12141201	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12141246	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12141416	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12402052	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs12403443	0.83[CHD][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap]
rs12403465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12406943	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12407992	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs12408019	0.81[EUR][1000 genomes]
rs12409137	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12409754	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12409933	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12722830	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12725210	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12733312	0.87[CEU][hapmap]
rs12734068	0.83[EUR][1000 genomes]
rs12734551	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs12737239	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12738317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12751375	0.91[CEU][hapmap]
rs12753426	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12755094	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12757288	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1339458	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs1467653	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1536262	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1536263	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1538557	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1555849	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1556915	0.82[JPT][hapmap]
rs1556916	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1556917	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17034643	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17034821	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17396382	0.87[CEU][hapmap]
rs17400510	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap]
rs17401924	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs17401966	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs17402762	0.94[ASN][1000 genomes]
rs17410217	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17410793	0.88[EUR][1000 genomes]
rs17411502	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs1889309	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap]
rs2004034	0.84[EUR][1000 genomes]
rs2027330	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2039778	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2148152	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182326	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2185252	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2229687	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2236678	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2275424	0.87[CEU][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs2276100	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34045426	0.89[EUR][1000 genomes]
rs34075302	0.87[EUR][1000 genomes]
rs34215045	0.84[EUR][1000 genomes]
rs34225619	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34565762	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34636442	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35388505	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35716098	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35759975	0.81[ASN][1000 genomes]
rs35811280	0.84[ASN][1000 genomes]
rs35837142	0.82[EUR][1000 genomes]
rs35850116	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3737155	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3748575	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3748577	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3748578	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3748579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3748581	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs3753037	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs3762286	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3762288	0.80[ASN][1000 genomes]
rs4240911	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4333852	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4348727	0.91[CEU][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.84[TSI][hapmap]
rs4475756	0.93[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4529713	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4623	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4845930	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4845931	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4845932	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4845933	0.82[EUR][1000 genomes]
rs4845934	0.80[EUR][1000 genomes]
rs4846197	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes]
rs4846198	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4846199	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs4846205	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4846206	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4846207	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4846208	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs4846209	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4846210	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs4846212	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4846213	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4846216	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4846218	0.80[ASN][1000 genomes]
rs4846219	0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4846221	0.80[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs55676616	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58053556	0.84[EUR][1000 genomes]
rs58549151	0.81[EUR][1000 genomes]
rs58697740	0.88[EUR][1000 genomes]
rs60743860	0.84[EUR][1000 genomes]
rs61326491	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61775885	0.80[AMR][1000 genomes]
rs61775887	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61778376	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61778399	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778401	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778402	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61778403	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61778404	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6541085	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6541089	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6541090	0.90[ASN][1000 genomes]
rs6541094	0.95[JPT][hapmap]
rs6661326	0.82[JPT][hapmap]
rs6674843	0.91[CEU][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs6674949	0.86[ASN][1000 genomes]
rs6682868	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6685895	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6696056	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6700866	0.91[CEU][hapmap]
rs746881	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7520651	0.83[EUR][1000 genomes]
rs7520935	0.91[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7524693	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7530167	0.84[EUR][1000 genomes]
rs7546364	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7546368	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7553228	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7553935	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8019	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs912961	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs912962	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs912963	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9332414	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs946501	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs946502	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs946503	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs946504	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9651117	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv2764192	chr1:10383734-10594186	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12131441	PGD	cis	lymphoblastoid	seeQTL
rs12131441	KIF1B	cis	parietal	SCAN
rs12131441	KIF1B	cis	Thyroid	GTEx
rs12131441	APITD1	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10364600-10431000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:10380400-10436600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:10381000-10436400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:10385200-10436400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:10386000-10434800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:10393200-10431200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:10393600-10430800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr1:10393800-10444600	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:10394200-10441800	Strong transcription	Liver	Liver
10	chr1:10397800-10434800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:10398000-10438000	Weak transcription	GM12878-XiMat	blood
12	chr1:10400200-10438200	Weak transcription	Stomach Mucosa	stomach
13	chr1:10400600-10434600	Weak transcription	K562	blood
14	chr1:10400600-10446400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:10400600-10447400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:10402600-10437200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:10404400-10433800	Weak transcription	Dnd41	blood
18	chr1:10409800-10447400	Weak transcription	Small Intestine	intestine
19	chr1:10411600-10431200	Weak transcription	HUVEC	blood vessel
20	chr1:10418400-10445600	Strong transcription	Fetal Brain Female	brain
21	chr1:10419200-10437800	Weak transcription	Right Atrium	heart
22	chr1:10419200-10442800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:10419800-10441200	Strong transcription	Fetal Stomach	stomach
24	chr1:10420000-10440000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr1:10420200-10429600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:10420200-10432800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr1:10420200-10445000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:10420200-10446000	Strong transcription	Brain Germinal Matrix	brain
29	chr1:10420800-10429800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:10420800-10429800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr1:10420800-10437400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr1:10421000-10429800	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:10421000-10440000	Strong transcription	Fetal Intestine Small	intestine
34	chr1:10421000-10440200	Strong transcription	Stomach Smooth Muscle	stomach
35	chr1:10422000-10431200	Weak transcription	HMEC	breast
36	chr1:10422200-10431400	Weak transcription	Primary B cells from cord blood	blood
37	chr1:10422400-10447200	Weak transcription	Fetal Heart	heart
38	chr1:10422600-10440600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr1:10424800-10429800	Strong transcription	Fetal Intestine Large	intestine
40	chr1:10424800-10433000	Strong transcription	Brain Hippocampus Middle	brain
41	chr1:10425000-10433000	Strong transcription	Brain Cingulate Gyrus	brain
42	chr1:10425000-10436800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:10425000-10438000	Strong transcription	Adipose Nuclei	Adipose
44	chr1:10425000-10438200	Strong transcription	Fetal Muscle Leg	muscle
45	chr1:10425200-10429400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr1:10425200-10429400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:10425200-10429400	Strong transcription	Placenta	Placenta
48	chr1:10425200-10429600	Strong transcription	Brain Angular Gyrus	brain
49	chr1:10425200-10432600	Strong transcription	Brain Substantia Nigra	brain
50	chr1:10425200-10432800	Strong transcription	Rectal Mucosa Donor 29	rectum

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