Variant report

Variant	rs61326491
Chromosome Location	chr1:10424836-10424837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs1002076	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1013952	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1013953	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10492971	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10492972	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10492973	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1065828	0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10864449	0.85[AMR][1000 genomes]
rs10864453	0.88[ASN][1000 genomes]
rs11121535	0.85[AMR][1000 genomes]
rs11121537	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11121539	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11121541	0.81[ASN][1000 genomes]
rs11121545	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11121551	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11121555	0.80[ASN][1000 genomes]
rs11121557	0.84[ASN][1000 genomes]
rs1138791	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11576459	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11580789	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11582123	0.87[AMR][1000 genomes]
rs11584023	0.86[AMR][1000 genomes]
rs11585794	0.86[ASN][1000 genomes]
rs11586842	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11587309	0.86[ASN][1000 genomes]
rs11587495	0.85[ASN][1000 genomes]
rs11587854	0.86[ASN][1000 genomes]
rs12119477	0.80[AMR][1000 genomes]
rs12120042	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12120191	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12122029	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12125535	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12127604	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12128374	0.95[ASN][1000 genomes]
rs12130563	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12131441	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12132134	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12137880	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12139981	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12141201	0.86[ASN][1000 genomes]
rs12141246	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12141416	0.89[AMR][1000 genomes]
rs12403465	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12406943	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12409137	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12409754	0.86[ASN][1000 genomes]
rs12409933	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12722830	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12725210	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12737239	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12738317	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12753426	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12757288	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1467653	0.92[ASN][1000 genomes]
rs1536262	0.84[ASN][1000 genomes]
rs1538557	0.85[AMR][1000 genomes]
rs1555849	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1556916	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1556917	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17034643	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17034821	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17402762	0.92[ASN][1000 genomes]
rs17410217	0.94[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2039778	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2148152	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182326	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2185252	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2276100	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34565762	0.87[AMR][1000 genomes]
rs34636442	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35388505	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35811280	0.82[ASN][1000 genomes]
rs35850116	0.87[AMR][1000 genomes]
rs3737155	0.82[ASN][1000 genomes]
rs3748577	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3748578	0.80[AMR][1000 genomes]
rs3748579	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3748581	0.84[ASN][1000 genomes]
rs4240911	0.87[AMR][1000 genomes]
rs4333852	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4475756	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4529713	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4623	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4845931	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4845932	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846197	0.81[AMR][1000 genomes]
rs4846205	0.87[AMR][1000 genomes]
rs4846206	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846207	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4846209	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4846212	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4846213	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4846216	0.84[ASN][1000 genomes]
rs61778376	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61778399	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61778401	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61778402	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61778403	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61778404	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6541089	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6541090	0.88[ASN][1000 genomes]
rs6674949	0.84[ASN][1000 genomes]
rs6682868	0.84[ASN][1000 genomes]
rs6685895	0.87[AMR][1000 genomes]
rs6696056	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs746881	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7524693	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7546364	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7546368	0.92[ASN][1000 genomes]
rs7553228	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7553935	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8019	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs912961	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs912963	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9332414	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs946501	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs946502	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs946503	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv2764192	chr1:10383734-10594186	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10364600-10431000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:10380400-10436600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:10380600-10426400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:10381000-10436400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:10385200-10436400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:10386000-10434800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:10393200-10431200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:10393600-10430800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:10393800-10444600	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:10394200-10441800	Strong transcription	Liver	Liver
11	chr1:10395600-10425200	Weak transcription	Thymus	Thymus
12	chr1:10397800-10425400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:10397800-10434800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr1:10398000-10438000	Weak transcription	GM12878-XiMat	blood
15	chr1:10398400-10425400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:10400200-10438200	Weak transcription	Stomach Mucosa	stomach
17	chr1:10400600-10434600	Weak transcription	K562	blood
18	chr1:10400600-10446400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:10400600-10447400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:10402600-10437200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:10404400-10433800	Weak transcription	Dnd41	blood
22	chr1:10409000-10425200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:10409000-10427800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:10409200-10425200	Weak transcription	Fetal Thymus	thymus
25	chr1:10409400-10425200	Weak transcription	Psoas Muscle	Psoas
26	chr1:10409800-10447400	Weak transcription	Small Intestine	intestine
27	chr1:10411600-10431200	Weak transcription	HUVEC	blood vessel
28	chr1:10412800-10425200	Weak transcription	Right Ventricle	heart
29	chr1:10413600-10425200	Weak transcription	Colonic Mucosa	Colon
30	chr1:10418400-10445600	Strong transcription	Fetal Brain Female	brain
31	chr1:10418600-10427000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr1:10419200-10426600	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr1:10419200-10437800	Weak transcription	Right Atrium	heart
34	chr1:10419200-10442800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr1:10419800-10441200	Strong transcription	Fetal Stomach	stomach
36	chr1:10420000-10440000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr1:10420200-10426600	Strong transcription	HSMMtube	muscle
38	chr1:10420200-10426800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:10420200-10427000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:10420200-10429600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr1:10420200-10432800	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:10420200-10445000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:10420200-10446000	Strong transcription	Brain Germinal Matrix	brain
44	chr1:10420800-10426000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr1:10420800-10429800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr1:10420800-10429800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:10420800-10437400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr1:10421000-10426400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:10421000-10429800	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:10421000-10440000	Strong transcription	Fetal Intestine Small	intestine

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