The 2.0 version of rSNPBase

Variant report

Variant rs6541090
Chromosome Location chr1:10402842-10402843
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10358800-10407000 Weak transcription Primary B cells from cord blood blood
2 chr1:10364600-10431000 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:10380200-10404800 Weak transcription Psoas Muscle Psoas
4 chr1:10380400-10436600 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr1:10380600-10426400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:10381000-10436400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr1:10385200-10436400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:10386000-10434800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr1:10386400-10403000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr1:10386400-10421600 Weak transcription Hela-S3 cervix
11 chr1:10386800-10408600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:10393200-10415800 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr1:10393200-10431200 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr1:10393600-10430800 Strong transcription Primary neutrophils fromperipheralblood blood
15 chr1:10393800-10406000 Strong transcription Placenta Placenta
16 chr1:10393800-10444600 Strong transcription Cortex derived primary cultured neurospheres brain
17 chr1:10394200-10409800 Strong transcription Skeletal Muscle Female skeletal muscle
18 chr1:10394200-10410000 Strong transcription Fetal Brain Female brain
19 chr1:10394200-10410000 Strong transcription Rectal Mucosa Donor 29 rectum
20 chr1:10394200-10411400 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr1:10394200-10413200 Strong transcription Duodenum Smooth Muscle Duodenum
22 chr1:10394200-10414200 Strong transcription Brain Germinal Matrix brain
23 chr1:10394200-10414200 Strong transcription Stomach Smooth Muscle stomach
24 chr1:10394200-10415800 Strong transcription Adipose Nuclei Adipose
25 chr1:10394200-10415800 Strong transcription Duodenum Mucosa Duodenum
26 chr1:10394200-10441800 Strong transcription Liver Liver
27 chr1:10394400-10404400 Strong transcription Colon Smooth Muscle Colon
28 chr1:10394400-10407000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:10394400-10409400 Strong transcription Sigmoid Colon Sigmoid Colon
30 chr1:10394400-10410000 Strong transcription Rectal Mucosa Donor 31 rectum
31 chr1:10394400-10411200 Strong transcription Skeletal Muscle Male skeletal muscle
32 chr1:10394400-10411400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:10394400-10413400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr1:10394400-10414200 Strong transcription Primary monocytes fromperipheralblood blood
35 chr1:10394600-10405200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:10395200-10403000 Weak transcription Dnd41 blood
37 chr1:10395600-10403200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:10395600-10408400 Weak transcription Small Intestine intestine
39 chr1:10395600-10425200 Weak transcription Thymus Thymus
40 chr1:10396400-10409400 Strong transcription HepG2 liver
41 chr1:10397600-10403000 Weak transcription Primary T helper cells PMA-I stimulated --
42 chr1:10397600-10421000 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr1:10397800-10403000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:10397800-10407400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr1:10397800-10408400 Weak transcription Fetal Thymus thymus
46 chr1:10397800-10410600 Weak transcription Right Ventricle heart
47 chr1:10397800-10425400 Weak transcription Primary T helper naive cells fromperipheralblood blood
48 chr1:10397800-10434800 Weak transcription Primary B cells from peripheral blood blood
49 chr1:10398000-10421000 Weak transcription NHEK skin
50 chr1:10398000-10438000 Weak transcription GM12878-XiMat blood

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015