The 2.0 version of rSNPBase

Variant report

Variant rs12139981
Chromosome Location chr1:10390696-10390697
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:10357600-10397000 Weak transcription Fetal Thymus thymus
2 chr1:10358800-10407000 Weak transcription Primary B cells from cord blood blood
3 chr1:10364200-10394600 Weak transcription Dnd41 blood
4 chr1:10364600-10431000 Weak transcription Placenta Amnion Placenta Amnion
5 chr1:10365200-10398400 Weak transcription Fetal Heart heart
6 chr1:10365800-10394800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:10370200-10393800 Weak transcription Right Atrium heart
8 chr1:10378200-10397200 Weak transcription GM12878-XiMat blood
9 chr1:10378800-10395200 Weak transcription Thymus Thymus
10 chr1:10379400-10397200 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:10379800-10399400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr1:10380200-10399800 Weak transcription Stomach Mucosa stomach
13 chr1:10380200-10404800 Weak transcription Psoas Muscle Psoas
14 chr1:10380400-10399600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:10380400-10436600 Weak transcription ES-WA7 Cell Line embryonic stem cell
16 chr1:10380600-10394400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:10380600-10401000 Weak transcription A549 lung
18 chr1:10380600-10426400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr1:10380800-10394200 Weak transcription K562 blood
20 chr1:10381000-10436400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:10381600-10391400 Strong transcription Adipose Nuclei Adipose
22 chr1:10381600-10392000 Strong transcription HUES64 Cell Line embryonic stem cell
23 chr1:10381600-10392200 Strong transcription Fetal Brain Female brain
24 chr1:10381800-10391000 Strong transcription Liver Liver
25 chr1:10382600-10394400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr1:10382600-10394400 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr1:10382600-10394400 Weak transcription Osteobl bone
28 chr1:10382800-10397200 Weak transcription NHLF lung
29 chr1:10384000-10395000 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr1:10384200-10392400 Strong transcription Cortex derived primary cultured neurospheres brain
31 chr1:10384200-10394400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:10384400-10394400 Weak transcription HUVEC blood vessel
33 chr1:10384400-10395200 Weak transcription Primary B cells from peripheral blood blood
34 chr1:10384800-10394600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:10385200-10396400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:10385200-10397200 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr1:10385200-10436400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr1:10386000-10394400 Weak transcription iPS-15b Cell Line embryonic stem cell
39 chr1:10386000-10434800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr1:10386200-10394400 Weak transcription Primary T cells from cord blood blood
41 chr1:10386400-10394400 Weak transcription Colon Smooth Muscle Colon
42 chr1:10386400-10396000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr1:10386400-10403000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr1:10386400-10421600 Weak transcription Hela-S3 cervix
45 chr1:10386600-10394200 Weak transcription Esophagus oesophagus
46 chr1:10386600-10394200 Weak transcription Spleen Spleen
47 chr1:10386600-10394400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:10386600-10394400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:10386600-10394400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
50 chr1:10386600-10394400 Weak transcription Gastric stomach

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Last update: Aug 31, 2015